Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2806 ATGAGTGGCGGTTTTGAGGTTGTAGAGTGGCTTAGACCTCTAGTTGAGACCAATGATTGGGATTATGCAGTTGCTTGGAAATTTGGGGTTGACCCAACTAGATTTATTGAGTGGATTGGTTGCTGTTGTGGAGGGAGTAACAAGGAAAACATGGAGCATGCTGTGATGCCAAAAGTTGAAATATTGAGTGAAGAAAGCCACTTGAATCTCATTTGCAGGGACACACAATTTCCGCATCAAGTTAGAACAAAGACTTGTGAGGCTCTTTCCAAGCTTCCTTTAGCAATGTCTCTCTATTCTGGTGTCCATGGAGAGGTTGCAATTTCACAACAACCAAAATGGCTCATTCAGGAGGATTCAAGTGGAACTCAAGTTTTGATCCCTGTTGTGGGTGGGCTTATTGAGCTTTTCACTGCTAAGCTGATTCCAAAAGATATAGATGTCATAGAGTTCATAACAGAGAACTGCTGTGTCTCTGTGAAGAAAGAAGCCATATCTGCACAGAGCTCCACCACCAGTCTGAACTTCAATGAGCACTTTACTTTAGCTGCTCCTGGTGTTCATCTACCTCCAGTAAACCAGTGCAGCTCCAATCCTAGCACTGAAGGACCATCCGGTGGGTCTAATCTTTCACTTGAACGCCACCAATCATTTGATTCAAAGTTTGTCTGCATGATTCCACATAAATATATGAACAAACCAGTTGAAATATCTCCTATCATCAAATCTAAAAAGCCCAAGTACAATGAGACTTCAGGGAAACGGAAGAGAGGTTTGAGTTCCGATCGTGGCCACAGTGAAGAAGATCAAGGAAAATTGGCCAGGGAGACTCAAAAGGAAGGGTACTCTGCTAAAAATCTTGTCACTGAGAGGAATAGGAGGGACAAAATCAAAAAAGGGCTTTATACTCTAAGGTCTCTAGTCCCAAAGATAACCAAGATGGATATAGCATCCATTCTTACAGATGCAATTGACTATATAAAAGAATTACAGCGGCAAGAGAATGAACTTAAAGAAGAGGTCGAGGCTTTGGAAGTAGAGGACTGCGAGAAGTACACAACACAAGAACAAGGAGTAACCTCAAGTCTCTCTCACACTAATGTTGATCAAACTTCTTCTGACTGCACTGAAAATACAAAGATGGAGGTGCAAGCAGAAGTGCACCACCTTGGTGGGACAGATTTCTTGATTAAGTTATACTGTGACCACAAGCAAGGTAGGTTTTCAAGGTTGATGGAAGCCATGCATTCATTTGGGCTGCATGTGGTTAATGCTAATATGACCACTTTAAATGGCAAAGTGCTTAACATTCTGACTGTTGAGGAAGGTACTTTCTTGAAGATCTTCCTCTCCTCTCTTTGA 1362 0.42 MSGGFEVVEWLRPLVETNDWDYAVAWKFGVDPTRFIEWIGCCCGGSNKENMEHAVMPKVEILSEESHLNLICRDTQFPHQVRTKTCEALSKLPLAMSLYSGVHGEVAISQQPKWLIQEDSSGTQVLIPVVGGLIELFTAKLIPKDIDVIEFITENCCVSVKKEAISAQSSTTSLNFNEHFTLAAPGVHLPPVNQCSSNPSTEGPSGGSNLSLERHQSFDSKFVCMIPHKYMNKPVEISPIIKSKKPKYNETSGKRKRGLSSDRGHSEEDQGKLARETQKEGYSAKNLVTERNRRDKIKKGLYTLRSLVPKITKMDIASILTDAIDYIKELQRQENELKEEVEALEVEDCEKYTTQEQGVTSSLSHTNVDQTSSDCTENTKMEVQAEVHHLGGTDFLIKLYCDHKQGRFSRLMEAMHSFGLHVVNANMTTLNGKVLNILTVEEGTFLKIFLSSL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2806 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 347 IPR036638 GO:0046983
Lja4g2806 453 Gene3D - 273 348 IPR036638 GO:0046983
Lja4g2806 453 SMART finulus 287 336 IPR011598 GO:0046983
Lja4g2806 453 PANTHER TRANSCRIPTION FACTOR BHLH90 66 442 - -
Lja4g2806 453 MobiDBLite consensus disorder prediction 355 374 - -
Lja4g2806 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Lja4g2806 453 MobiDBLite consensus disorder prediction 252 279 - -
Lja4g2806 453 MobiDBLite consensus disorder prediction 241 288 - -
Lja4g2806 453 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 153 IPR025610 -
Lja4g2806 453 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 66 442 - -
Lja4g2806 453 Pfam Helix-loop-helix DNA-binding domain 289 331 IPR011598 GO:0046983
Lja4g2806 453 CDD ACT_UUR-ACR-like 396 440 - -
Lja4g2806 453 Coils Coil 320 350 - -
Lja4g2806 453 MobiDBLite consensus disorder prediction 191 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2806 Lja-Chr4 46736851 46740594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2806 284 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 44.068 5.03e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2806 bHLH-MYC_N 5.4e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2806 - - gmx:100807261 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2806 4 46736851 46740594 Lja4g2806 4 46736851 46740594 ECH