Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2793 ATGGGAAGGGGTAGAGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTAACTTTCTCCAAAAGGAGAGCTGGGCTTCTCAAGAAAGCTCATGAGATCTCTGTTCTCTGCGATGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACCGATTCTTGCATGGAGAAGATACTGGAGCGCTATGAAAGGTATGCCTATGCAGAGAGACAGCTAGTTGCAAATGATTCTGAATCACAGGGAAATTGGACTATTGAGTATACTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGGAACCACAGGCACTATATGGGAGAAGATTTGGGTTCAATGAGTCTCAAAGAACTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAGCACATTCGTACACGCAGAAACCAACTCATGTACGAGTCCATTTCGGAGCTTCAGAAAAAGGAGAAAGTGATTCAGGAGCAGAATAACATGCTTGCAAAAAAGATCAAGGAGAAAGAAAAGATTGCAGCCCAGCAGCAGCACGCACAATGGGATCATCCAAACCATGGAGTTAATGCACCTTTCTTAATGCAACAGCCACTTCCAACTTTGAACATGGGTGGCAATTACCGTGAAGATCATGCTCCAGATGTTGGCAGGAATGAGCTTGACCTGACTCTGGAACCTTTGTATTCCTGCCACCTTGGATGCTTTTGA 726 0.449 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKHIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAQQQHAQWDHPNHGVNAPFLMQQPLPTLNMGGNYREDHAPDVGRNELDLTLEPLYSCHLGCF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2793 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lja4g2793 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lja4g2793 241 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2793 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Lja4g2793 241 Coils Coil 151 181 - -
Lja4g2793 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g2793 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Lja4g2793 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g2793 241 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 218 - -
Lja4g2793 241 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2793 Lja-Chr4 46154188 46163973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2793 1 241 MADS-box Gene Family AT1G26310 64.706 6.25e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g2793 K-box 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2793 K09264 - gmx:100810129 424.476