Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2787 ATGGATTACGGTCGAGACGGGAACGTGGTGCAAATTATCACCACCGGCGGCGGTGGCGGAGGAGGAGGAGGAGGAGGAGGGGGAGATAGCTGGCCGGGGGACCAGGCGGATTGGGCGACGGAAGACGAGTACCGGTACTGGAACGGCAACGAAGACACGGCGCCTTCGAACGGTGACGGGAGGCAGTCGCAGTCGCGGTCGGGGAGCGAGCCGCCGAGCAAGAAGGCTCGGGGCTCGTCTGCGACGTCGTCGTCGGCGTCGCAAGAGCGGTCGAAGGCGATCGGGAAGATGTTTTTCAAGACGAAGCTGTGCTGCAAGTTCAGGGCAGGGACGTGCCCGTACGTCACCAATTGCAACTTCGCCCACAGCATCGAGGAGCTCCGCCGTCCGCCGCCGAATTGGCAGGAGATTGTGGCGGCGCATGAGGAGGAGAAGGCGGTTCTCATGTCGGAGCCTAGGGAGGAGTTTCAGATCCCCACCATCGGGTCCTATGCAGGGGACGTGTCGCAGAGGTCTTACAAGGGGCGGCACTGCAAGAAATTCTATACGGAGGAAGGGTGCCCCTATGGGGATAGCTGCACTTTTCTTCATGATGAGCAATCTAAGAACCGCGAGAGCGTCGCGATAAGTTTAGGCCCTGGTGGTTATGCTGGCGGCGGCGGTGGTGGTGGTAGTGGTGGTGGTGCTGGTGGTGGTTCTGGTAGTGGTGCTGTTACTCCTACTGGTGCTGCTAGTGCTGCTGCTTCTTCTGCTGGGAATGGAGCTAATGTCAAGCCTTCTAATTGGAAAACCAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCTACAGAACTGCACAGATATGGTGGTGGGCTTATGGAGGGAGAAAGCAGAGACACTGCATCCGCTATTGCGGCTGACACTAAACAGGGTGTGCCTTCAAAGACTCTTGCTGATAATGTGGTTGCATCAGCTACTCCTATTGCTCACTCAGATATTTATCATATTGGAGTCCCATCACAGAGGCCTTCCATTGTGCTGCAGAGGCCAGGGCAAAGAACTCTTCAGAAGTGGAAAGGTCCCGATAAAATCAGTAGAATATACGGTGACTGGATAGATGACATCGAATGA 1149 0.557 MDYGRDGNVVQIITTGGGGGGGGGGGGGDSWPGDQADWATEDEYRYWNGNEDTAPSNGDGRQSQSRSGSEPPSKKARGSSATSSSASQERSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVLMSEPREEFQIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGGSGGGAGGGSGSGAVTPTGAASAAASSAGNGANVKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVASATPIAHSDIYHIGVPSQRPSIVLQRPGQRTLQKWKGPDKISRIYGDWIDDIE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2787 382 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Lja4g2787 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 21 214 - -
Lja4g2787 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 236 379 - -
Lja4g2787 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 236 379 IPR045877 GO:0003729
Lja4g2787 382 Gene3D - 94 129 - -
Lja4g2787 382 Gene3D - 255 293 - -
Lja4g2787 382 Pfam CCCH-type zinc finger 176 198 IPR041367 -
Lja4g2787 382 MobiDBLite consensus disorder prediction 50 90 - -
Lja4g2787 382 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Lja4g2787 382 ProSiteProfiles Zinc finger C3H1-type profile. 98 125 IPR000571 GO:0046872
Lja4g2787 382 Gene3D - 165 212 - -
Lja4g2787 382 MobiDBLite consensus disorder prediction 1 90 - -
Lja4g2787 382 SUPERFAMILY CCCH zinc finger 170 200 IPR036855 GO:0046872
Lja4g2787 382 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Lja4g2787 382 SMART c3hfinal6 98 124 IPR000571 GO:0046872
Lja4g2787 382 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Lja4g2787 382 SUPERFAMILY CCCH zinc finger 96 129 IPR036855 GO:0046872
Lja4g2787 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Lja4g2787 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 99 123 IPR000571 GO:0046872
Lja4g2787 382 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 214 IPR045877 GO:0003729
Lja4g2787 382 SUPERFAMILY CCCH zinc finger 258 292 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2787 Lja-Chr4 45989054 45992280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2787 263 291 C3H Transcription Factor Family AT1G68200 62.069 3.44e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g2787 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2787 - - gmx:100788208 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2787 4 45989054 45992280 Lja4g2787 4 45989054 45992280 ECH