Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2786 ATGTCTTCGCAATCGCAATCGCAATCGCAATCGCAATCGGACTATGTTGACACGCCGGCAGCAGTGGTCGCATACAACACCCCACCGGCACTAATAGCACTTACCCTCACCGTCCTTGTTGTTTGCTTCGTGGCTTTCAGCATCATCTACCTCTGCAAATACTGCTGTGCAGGTGTTGTTCACACGTGGACCTTCGAACGCACCGCCTCCGGTTCCCTCATCCGTCTCTCCCCGGTGAGGTCACCGCCGAGAGGCCTCGAACCTTCCCTTCTCCAGAGCTTCCCAACCTTCCTCTACTCCTCCGTGAAGGATCTCCGGAAGGATAAGAAAAACTACAGCCTCGAATGCGCGATTTGCCTTTTTGAATTCGAGGACGACAGCTTCCTCCGCCTCTTGACCGTGTGCTGTCATGTCTTCCACCAAGAATGCATAGACCTCTGGCTTGGTTCCCACAAGACCTGCCCCGTTTGTCGAACCGACCTTGCCACGCCCGTGTCCCTCGCCTGTGACGAGGTCCGCCTCGATGTTCCAGACGAGGAAGACACGGGCGATGGAGATAAAAAACGAGAACAACATGAAGGAGATGAAAGTGTGCAGAGGTTGGAGAGGGCGCACTCAACGGGACATTCCATTGTTATGATTAGAGGAAGGGGAGGAGATGATGAAGGTATTACTTATGATGACGATAAATATACTCTGAGATTGCCGGGGCATGTAATAAGAGCAGGGCACAACTGCACGAGGAGCTTGGCAAGTTACAAGGACATGGAAGGGCCTGCGCCTTGCAGTAATTGTGGATTTGTTCAACCGGTGTCTGCTTCCACTTCCCATGCTCAACAATCTTGA 846 0.5272 MSSQSQSQSQSQSDYVDTPAAVVAYNTPPALIALTLTVLVVCFVAFSIIYLCKYCCAGVVHTWTFERTASGSLIRLSPVRSPPRGLEPSLLQSFPTFLYSSVKDLRKDKKNYSLECAICLFEFEDDSFLRLLTVCCHVFHQECIDLWLGSHKTCPVCRTDLATPVSLACDEVRLDVPDEEDTGDGDKKREQHEGDESVQRLERAHSTGHSIVMIRGRGGDDEGITYDDDKYTLRLPGHVIRAGHNCTRSLASYKDMEGPAPCSNCGFVQPVSASTSHAQQS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2786 281 MobiDBLite consensus disorder prediction 180 202 - -
Lja4g2786 281 CDD RING-H2_EL5_like 115 158 - -
Lja4g2786 281 SUPERFAMILY RING/U-box 92 165 - -
Lja4g2786 281 MobiDBLite consensus disorder prediction 176 202 - -
Lja4g2786 281 PANTHER RING-H2 FINGER PROTEIN ATL29 21 257 - -
Lja4g2786 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 164 IPR013083 -
Lja4g2786 281 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lja4g2786 281 Pfam Ring finger domain 115 158 IPR001841 -
Lja4g2786 281 PANTHER RING FINGER DOMAIN-CONTAINING 21 257 - -
Lja4g2786 281 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2786 Lja-Chr4 45965216 45966061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2786 20 212 C3H Transcription Factor Family AT2G35420 37.981 1.75e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2786 - - gmx:100815505 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2786 4 45965216 45966061 Lja4g2786 4 45965216 45966061 PCT