Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2780 ATGGCTTCCCTTGGCTACCCTAAAACCTGGATTCCTTATGTGAACAGCAGAGACTGTTCTCAAGGAATTTGTAGCGTGTACTGTCCACAATGGTGTTACATAATCTATCCTCCTCCTCCACCCTTTGAATACCCTAGCGATGTTGATTCAAGCCCAAATTTCTCCCCTGTGGTTATTGCAATCGTTGGGATTTTAGCCACTGCTTTTATACTTCTAAGTTACTATGTCATCATATCCAAGTACTGTGGCCATAGAGAATCTAGGGGAAGAGAGAACACTGATCAGAATGATGAATTGCAAGACATTCAAAATCATGAACCATGGCAAGTTACAAACACAGGCTTACATGAAGCTCTAATCAAGTCCATTGCAGTTTATAAATTCAACAAAGGAGATGGCTTTATTGGAGGAATAATGGACTGTTCTGTTTGTCTTAGTGAGTTTGAAGATGGTGAAAGTGTTAGACTCTTGCCAAAATGCAACCATGCTTTCCATCTTCCATGTATTGACACTTGGCTCAAATCTCACTCTACCTGTCCACTATGTCGTTCTTGCATATTCCCTTCCAATAATGCTTCAGCACTTGAGGTTGCAACACCAATGGTAGTGGAGATTCCTTCAATGAATAATGAAGCTAATTCAGAAAATCAAAATGTTGATGCAAGTGGCAATGAATTTGGAAGCATCATGAATCATGGTGGAACTGATTCAAAGGCTGAATTGCGTGCTTTTAGTGATTTGGGATGGCATAGAATAATTGAGATTAGAGATGAAGTGTGTGAATCGTTTAGAAGGTCGATGTCTATGGACCATTCTTGTCAAAGTGGTGTTTCAGTTGCTAATATGCTGCATATGAATCAAGAGGAAGAAGATGAAGGGTGCTCTTCTGGTGCTAGTCCATCAAAAAAATCATTAGGAGAAAGTAGCAAGATCAACTATAAAGGAAAGAAGTTGCATTGTGTATTGAGGCCAATTTCAATGAAGAGGTCATTTTCCAGTGGAAGATTCTCACATAGAAAAAGTGACAAAGGAAGGGAGGGAGATATTCCTGTTTGA 1056 0.3958 MASLGYPKTWIPYVNSRDCSQGICSVYCPQWCYIIYPPPPPFEYPSDVDSSPNFSPVVIAIVGILATAFILLSYYVIISKYCGHRESRGRENTDQNDELQDIQNHEPWQVTNTGLHEALIKSIAVYKFNKGDGFIGGIMDCSVCLSEFEDGESVRLLPKCNHAFHLPCIDTWLKSHSTCPLCRSCIFPSNNASALEVATPMVVEIPSMNNEANSENQNVDASGNEFGSIMNHGGTDSKAELRAFSDLGWHRIIEIRDEVCESFRRSMSMDHSCQSGVSVANMLHMNQEEEDEGCSSGASPSKKSLGESSKINYKGKKLHCVLRPISMKRSFSSGRFSHRKSDKGREGDIPV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2780 351 SUPERFAMILY RING/U-box 140 189 - -
Lja4g2780 351 MobiDBLite consensus disorder prediction 332 351 - -
Lja4g2780 351 SMART ring_2 141 182 IPR001841 -
Lja4g2780 351 MobiDBLite consensus disorder prediction 335 351 - -
Lja4g2780 351 CDD RING-H2_PA-TM-RING 140 183 - -
Lja4g2780 351 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Lja4g2780 351 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 338 - -
Lja4g2780 351 MobiDBLite consensus disorder prediction 287 310 - -
Lja4g2780 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
Lja4g2780 351 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 338 IPR044675 -
Lja4g2780 351 MobiDBLite consensus disorder prediction 292 308 - -
Lja4g2780 351 Pfam Ring finger domain 140 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2780 Lja-Chr4 45698981 45700036 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2780 1 302 C3H Transcription Factor Family AT3G03550 41.486 7.32e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2780 - - gmx:100792267 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2780 4 45698981 45700036 Lja4g2780 4 45698981 45700036 ECH
Lja4g2780 4 45698981 45700036 Lja4g2780 4 45698981 45700036 PCT