Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2770 ATGGCGTCTGAAGGTTTCACCGACAAGAACACTGTGTTCAGGAAACTCAAGGCGAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCAACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCTGCCGTTCATCGCAGTCTCGGCGTTCATATCAGCTTCGTGAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAATAACCGTGCTCAGGCTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCCAAGTACACATCCAGAGCTGCAGAGTTGTATAAGCAAATTCTTTCAAAAGAAGTAGCCAAAAGTATGGCTGAGGTGGCTAGCTTGCCTTCATCAACTGCTCCTTCTCAGTCTGGTCAAGGGGCTAATGCACTTTCTGATGCCAGGACCAATGAAGTAATGAAAAAAAACATTCTGGAGAATCCAGAAAAGCTTGAAAGCACTTCGTCACCTCGAATTGCACGTTCAGTAATTTCAAGTACTGTGAGAAAGCCTATCGGGACAAAAAAGACTGGGAAAGGCGGGGGACTTGGTGCCCAAAAGCTAACTAGAAAGCCAAGTGAATCTCTCTACGAGCAGAAGCCTGAAGAGCCACCTGCTCCGGTTGCATCCTCAACAAACAACATTATGCCTTCTCCTTCTGGACCATCTCGGTTCGAGTATGTAGAAAATGTTCAATCATCCGAGTTGTATTCTGGAAGTTCAGATGTAATAAGTCATGTGTCTGTACCAAAGTCATCAAGCTTCTTTGGAGACTTTGGAATGGATGGTGGCTTTCCAAAAAAGTCTGGGTCAAGTTCCTCAAAAGTTGAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATATCTTCATCCCAATTTTTTGGAGACAATAAGGCTGCAGATGTGGAAGCGCGAGCTACTTTGTCAAAGTTTTCAGGTTCGAATGCCATCTCCAGTGCTGATCTATTTGGAGGCGACTCAGGAGACTCTTCCATTGATCTTGCTGCTAACGTTCTGCTCAATAGATTATCTTTCCAGGTGCAAGAGGATCTCTCATCCCTCAAGAACATTGCAGGAGAAACTGGGAAGAAGCTTACCTCCTTGGCCTCCACCTTAATGTCAGATTTTCAGGACCGGATCCTCTAA 1212 0.4439 MASEGFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQAFFKQHGWTDGGKIEAKYTSRAAELYKQILSKEVAKSMAEVASLPSSTAPSQSGQGANALSDARTNEVMKKNILENPEKLESTSSPRIARSVISSTVRKPIGTKKTGKGGGLGAQKLTRKPSESLYEQKPEEPPAPVASSTNNIMPSPSGPSRFEYVENVQSSELYSGSSDVISHVSVPKSSSFFGDFGMDGGFPKKSGSSSSKVEIQESDEARKKFSNAKSISSSQFFGDNKAADVEARATLSKFSGSNAISSADLFGGDSGDSSIDLAANVLLNRLSFQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2770 403 MobiDBLite consensus disorder prediction 222 241 - -
Lja4g2770 403 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Lja4g2770 403 MobiDBLite consensus disorder prediction 132 151 - -
Lja4g2770 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lja4g2770 403 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Lja4g2770 403 Pfam Putative GTPase activating protein for Arf 11 110 IPR001164 GO:0005096
Lja4g2770 403 MobiDBLite consensus disorder prediction 132 149 - -
Lja4g2770 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lja4g2770 403 MobiDBLite consensus disorder prediction 165 188 - -
Lja4g2770 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Lja4g2770 403 MobiDBLite consensus disorder prediction 161 241 - -
Lja4g2770 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 403 - -
Lja4g2770 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lja4g2770 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lja4g2770 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lja4g2770 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2770 Lja-Chr4 45103037 45109365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2770 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 3.52e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2770 K12493 K11855 gmx:100785169 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2770 4 45103037 45109365 Lja4g2770 4 45103037 45109365 ECH
Lja4g2770 4 45103037 45109365 Lja4g2770 4 45103037 45109365 PCT