Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2769 ATGGCGTCTGAAGGCTTCACCGACAAGAATGTTGTGTTCAAGAAACTCAAGACGAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACTCAACCTGGGCGTCCGTCACTTATGGGATCTTCCTCTGCATCGATTGCTCCGCGGTTCATCGTGGTCTCGGCGTTCACATCAGCTTCGTGAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAATTGAAAACAATGAGCTTTGGAGGAAACGGTCGTGCGCAGGTTTTCTTTAAGCAACATGGTTGGACTGACGGTGGCAAAATAGAAGCGAAGTATACATCCAGAGCTGCAGAATTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAAGCTTGCTTTCATCGCCTGTTGCTTCTCAGTCTGCCCAAGGGGTTAATGGACTTGCTGATGTTAAGACCAATGAATCACCGAAAGAAAACACTTTGGAGAAGCCAGAAAAGCCTGAGAGTACTTCTTCACCTAGAGCACACACAGCGGTATCAAATACTATGAAGAAGCCTATTGGGGCTAAAAAAGCTGGGAAGAGTGGGGGGCTTGGTGCCCGTAAGCTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAACCTGAAGAACCACCTGCTCCGATCCCATCCACCACAAACAACAATTTATCTGCTGTGCCATCTCTGACGTCTCGATTTGAGTATGTTGAAAATGTCCAGTCATCCGAGTTGAATTCTGGAGGTTCAAATGCAATAAGTCATGTTTCTGCACCAAAGGTATCAAGCTTCTTTTCAGACTTTGGAATGGATAGTGGCTTTCAGAAGAAATCTGGGCCAAGCTCTTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAAAAGTTCTCAAATGCTAAATCTATTTCGTCATCCCAATTTTTTGGAGATCAGAGCAAGGCAGATGTTGAAGCTAAAGCTACTTTATCGAAGTTTTCTGGTTCGAATGCCATCTCCAGCGCTGATCTTTTTGGTGACTCTGGCGATAACTCCATTGATCTTTCTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCATTGGCCTCTACCTTGATGACTGATTTTGGAGACCGAATCCTCTGA 1209 0.4442 MASEGFTDKNVVFKKLKTKSENKMCFDCNAKNSTWASVTYGIFLCIDCSAVHRGLGVHISFVRSTNLDSWSPEQLKTMSFGGNGRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEASLLSSPVASQSAQGVNGLADVKTNESPKENTLEKPEKPESTSSPRAHTAVSNTMKKPIGAKKAGKSGGLGARKLTKKPSESLYEQKPEEPPAPIPSTTNNNLSAVPSLTSRFEYVENVQSSELNSGGSNAISHVSAPKVSSFFSDFGMDSGFQKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQSKADVEAKATLSKFSGSNAISSADLFGDSGDNSIDLSASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDFGDRIL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2769 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 402 - -
Lja4g2769 402 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 402 - -
Lja4g2769 402 MobiDBLite consensus disorder prediction 133 234 - -
Lja4g2769 402 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Lja4g2769 402 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Lja4g2769 402 Gene3D Arf GTPase activating protein 2 141 IPR038508 -
Lja4g2769 402 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Lja4g2769 402 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Lja4g2769 402 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Lja4g2769 402 CDD ArfGap_ArfGap2_3_like 8 123 - -
Lja4g2769 402 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Lja4g2769 402 MobiDBLite consensus disorder prediction 281 300 - -
Lja4g2769 402 MobiDBLite consensus disorder prediction 155 170 - -
Lja4g2769 402 MobiDBLite consensus disorder prediction 133 154 - -
Lja4g2769 402 SMART arf_gap_3 10 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2769 Lja-Chr4 45078820 45087077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2769 13 91 C2H2 Transcription Factor Family AT4G21160 43.750 3.03e-18 83.6