Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2768 ATGACAGAGTACCCTTTGCCACCCTCCATGAATCTCTGGTCTGACGACAACTCCTCCGTCATGGAGGCCTTTATGAGCTCCTCCTCCGACCTCTCCTCTCTCTGGCCACACCCCGCCGTCTCCGCCACCGCCACCGCTCCAGGACCCGATGCTCAACCGATGCTCAACCCGGAAACCCTCCAGCAGCGTCTTCTGGCGCTGATCGAGGGCGCCAAGGAGAGCTGGACGTACGCTATCTTCTGGCAGCCGTCGTACGACTACTCCTCCGGTGCCCCTCTTCTTGGATGGGGTGACGGTTACTACAAGGGAGAGGAGGACAAAGATAAGGCGAAATCCACCAAAACGGCGTCGTCCTCCTCCGCCGAACAGGACCACCGCAAGAAGGTCCTCCGTGAACTCAATTCGTTAATCTCCGGCAACACCGCCTCCCCCGACGTCGCCGTTGACGAAGAGGTCACCGACACTGAGTGGTTCTTCCTTGTGTCGATGACGCAGTCTTTCGTCAACGGCAGCGGCCTCCCTGGTCAGGCGTACTTCAATTCCAACGCCGTCTGGGTTTCCGGCTCCGACCGACTCTCCGGTTCTGCCTGTGAGCGGGCCCGCCAGGGCCACCTCTTCGGGCTCCGGACTATGGTTTGCATACCGACACCGTGTGCCAACGGCGTCGTAGAGCTTGCATCCACGGAGGTGATTCCTCACAGCCCTGATCTGATGAACAAGGTGCGGATTCTGTTCAACTTCAACAATAACAACCTCCACAGTAACAACCTCGATGCGGCGGGTTCGTGGCCGGTAAATTCTGTTACGGCGGGGCACGGCGAGAACGACTCTTCTTCTCTCTGGCTCAACGATCCATCCTCTAGCGGGATTGAAATCAGGGATTCCGTTACGGTTGCGCCCGCGGCGGCGAATAACAACGCAACCGTAACAATTGGCAAGAGCTTGCAGTTCCAAAATTCTTCCAGTGCCCTAACGGAAACCCCAAGTTCCGTTCATGTTCACACTCCGAATGGATTTTTGCCGAGGGAGCTTAACTTTTCTAGTTCAATGAAGCCGGAATCTGGCGAGATTCTGAGCTTCGGGGAGAGCAAGAAGAACTCTTGTACTGGTAATGGCAATTTCTTTTCCGGACAGTCGCAATCGGGCGCGGTCGCCGGAGCAGAGAACAAGAGGAGGTCTCCTGGTGCCAGGAGCAGCGTTGACAATGGAATGCTCTCATTCACTTCCGGTGCGATTTTATCGGACTCGAATGTGAAATCTGGTGTTAGCCGTGGCGGTTGTGGTGGTGGTGATTCGGATCATTCAGATATTGAAGCTTCTGTTGTAAAGGAGGCTGACAGTAGTAGACTGGTGGAACCGGAGAAGAAGCCGCGGAAAAGAGGGCGGAAGCCAGCGAATGGCAGAGAGGAGCCGCTGAACCACGTTGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAACCAGAGGTTCTATGCTCTTCGCGCTGTGGTTCCTAATGTATCGAAGATGGACAAGGCGTCGCTTCTTGGCGATGCCATAGCTTTCATTGAGGAGCTGAATGCGAAGGTTAAAGGGGCAGAATCAGAGAAAGCTGAATTGGAGAAGCAATTGGAATCAGCTAAGAAGGAGCTCGAGGCGGTGAGTAAGAATCCGCCTCCGCCTGATAAAGAGGCCGATTCAAATTCGACGTCCTGCAAGCTGATTGATTTGGTCATAGACGTGAAGATCATGGGTTGGGATGCGATGATTAGGATCGAATGCAAGAAGAAGAACCACCCGGCCGTGAGGCTGATGGCAGCATTGAAGGAGCTGGACCTGGACTTGCAGCATGCCAGTGTGACGGTTGTGAACGATTTGATGATCCAACAGGCGACGGTGAACATGGGAAGCCGGTTTTACACACAGGAGGAGCTGTTGTTAGCGCTCTCCTCCAAAGTTGGGGATCCACGGTAG 1950 0.5497 MTEYPLPPSMNLWSDDNSSVMEAFMSSSSDLSSLWPHPAVSATATAPGPDAQPMLNPETLQQRLLALIEGAKESWTYAIFWQPSYDYSSGAPLLGWGDGYYKGEEDKDKAKSTKTASSSSAEQDHRKKVLRELNSLISGNTASPDVAVDEEVTDTEWFFLVSMTQSFVNGSGLPGQAYFNSNAVWVSGSDRLSGSACERARQGHLFGLRTMVCIPTPCANGVVELASTEVIPHSPDLMNKVRILFNFNNNNLHSNNLDAAGSWPVNSVTAGHGENDSSSLWLNDPSSSGIEIRDSVTVAPAAANNNATVTIGKSLQFQNSSSALTETPSSVHVHTPNGFLPRELNFSSSMKPESGEILSFGESKKNSCTGNGNFFSGQSQSGAVAGAENKRRSPGARSSVDNGMLSFTSGAILSDSNVKSGVSRGGCGGGDSDHSDIEASVVKEADSSRLVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAFIEELNAKVKGAESEKAELEKQLESAKKELEAVSKNPPPPDKEADSNSTSCKLIDLVIDVKIMGWDAMIRIECKKKNHPAVRLMAALKELDLDLQHASVTVVNDLMIQQATVNMGSRFYTQEELLLALSSKVGDPR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2768 649 MobiDBLite consensus disorder prediction 541 561 - -
Lja4g2768 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Lja4g2768 649 MobiDBLite consensus disorder prediction 371 386 - -
Lja4g2768 649 MobiDBLite consensus disorder prediction 418 479 - -
Lja4g2768 649 Coils Coil 515 549 - -
Lja4g2768 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 245 IPR025610 -
Lja4g2768 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 538 IPR036638 GO:0046983
Lja4g2768 649 MobiDBLite consensus disorder prediction 105 125 - -
Lja4g2768 649 Pfam Helix-loop-helix DNA-binding domain 473 518 IPR011598 GO:0046983
Lja4g2768 649 SMART finulus 475 524 IPR011598 GO:0046983
Lja4g2768 649 CDD bHLH_AtAIB_like 466 542 - -
Lja4g2768 649 MobiDBLite consensus disorder prediction 436 479 - -
Lja4g2768 649 MobiDBLite consensus disorder prediction 371 402 - -
Lja4g2768 649 PANTHER TRANSCRIPTION FACTOR MYC2 48 646 - -
Lja4g2768 649 Gene3D - 461 549 IPR036638 GO:0046983
Lja4g2768 649 PANTHER MYC 48 646 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2768 Lja-Chr4 44876537 44879165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2768 1 646 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.882 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2768 bHLH-MYC_N 9.2e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2768 K13422 - gmx:100790854 761.911