Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2755 ATGAAGATGGTGGGTAAGAAGAGTAGAAGTGTTTTCTTCCTTTGGTGGTTTGGAATGACTTTGCAGCTCTGCTTCTTGCTCTGTTCCTGTGCTGAGAAGACATCATTCAGAAGAGGTTTAAGGGACATAAACAGCATGGAATCAACATCTATTCATTCTGGACTCCATCTTGACACAGAAAACCCTAAGCAGTTGGTGGTTCATAATGGTATTGTTTCCGTCACTTTGTCAAGACCTGAGGGCTATGTCCTTGGAATATCTTATAATGGAATTGACAACATTCTTGAAGCTGAAAACGATGAACAAGATAGAGGGTACTTTGACGTCGTTTGGAATAGGCCAGGAGAACCTTATAAATTTGAGAGAATCCATGGGACAAATTTTTCTGTTATAGCAAGTGATGGGGATTCAGTAGAGGTTTCATTTTTAAAGACATGGACATCTTCCATGAGTGGCTCAAGTGTTCCCATAAACATAGACATAAGATACATTTTTCGAAGTGGTGATTCAGGATTTTATTCGTATGCAATATTCGATCGCCCTGAAGGATTGCCAGCTGTTGAGGTTGTTCAAATTAGGTTTGTTTACAAACTCAAGAAAGACAGGTTCAACTACATGGCTATATCAGATGCCAGGCAAAGATTGATGCCAACAATGAGAGATAGAGAAACGGGTCAGATTCTGGCTTACCCTGAAGCTGTTCTTTTAACTAGACCAACCAACCCAGAGTTCAAAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACACAGACAACAGTGTTCACGGATGGGTTAGTACTCTTGATTCTGTGGGTTTTTGGATGATAACACCCAGTAACGAGTTCCGCAATGGTGGCCCCATCAAGCAAGATCTTACTTCTCACGTTGGCCCCTTCACTCTCAATATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACCATGGTATTTGAAGAAGGGGAAACTTATAAGAAGGTTTTTGGCCCTGTATTTGTGTACCTTAACTCTGCTTCAACCAATGGTCACAATACAGTATCCCTCTGGTCAGATGCTAGCAAGCAGTTGTCCAAGGAGGTCAAAAGCTGGCCTTACGATTTCCCTAAATCACAAGATTTCTGTCCACCTAGTCAACGGGGAACAGTATTAGGAAGATTGCTAGTCCAAGATTGGCCCTTCAAGGAAGGAAAAATTCAATATCCTAACAATGCTTATGTTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGACTCAAAGGGATACTTTACAATTAATAATGTTGTGCCAGGTGATTATAATTTGTATTCTTGGGTCCCTGGCTTCATTGGTGATTACAAACATAATGCAAAAATCACCATCACACCTGGTGGAGTCATCAAATTGAGTACACTAGTATATAAACCTCCAAGAAATGGACCAACAATATGGGAAATTGGGGTCCCAGATCGCTCGGCTGCTGAATTCCACGTTCCAGACCCTTACCCTACACTTCTGAACAAATTATACAGCAAACTAGGCACAGACAAGTTTAGGCAATACGGGTTGTGGGATCGTTATGCTGATTTGTATCCTAGAGATGATCTTGTTTACACTGTTGGTAAAAACAAGTATAGTAAGGATTGGTTTTTTGCTCATGTTACAAGAAACACAGGAAATATAACATTCAAGCCAACGATATGGAAGATTATATTCGAACATGGTGAAGACATATTGAGCGGAAAATACACACTCCAACTGGCTCTGGCAAGTGCTACTGATGCTGAACTACAGGTTCGTTTCAATGACCCTAGCATATATCCACCCCACTTTACAACAGGGCCTATAGGAGGTGACAATGCAATAGGAAGGCATGGCATCCATGGATTGCATAGGCTGTTCAGCATTGATGTACCAAGTAATCTTCTTATGAAGGGAAAGAACACCATCTATCTGAGGCAGTCACTAGCCATAACTCCATTACCAGGACAAATTAATGGAATGATGTATGATTACATCCGCTTGGAACGACCTCCGACTCCAAATACATGA 2076 0.4162 MKMVGKKSRSVFFLWWFGMTLQLCFLLCSCAEKTSFRRGLRDINSMESTSIHSGLHLDTENPKQLVVHNGIVSVTLSRPEGYVLGISYNGIDNILEAENDEQDRGYFDVVWNRPGEPYKFERIHGTNFSVIASDGDSVEVSFLKTWTSSMSGSSVPINIDIRYIFRSGDSGFYSYAIFDRPEGLPAVEVVQIRFVYKLKKDRFNYMAISDARQRLMPTMRDRETGQILAYPEAVLLTRPTNPEFKGEVDDKYQYSCENTDNSVHGWVSTLDSVGFWMITPSNEFRNGGPIKQDLTSHVGPFTLNMFVSTHYAGKEVTMVFEEGETYKKVFGPVFVYLNSASTNGHNTVSLWSDASKQLSKEVKSWPYDFPKSQDFCPPSQRGTVLGRLLVQDWPFKEGKIQYPNNAYVGLALPGEAGSWQKESKGYQFWTQADSKGYFTINNVVPGDYNLYSWVPGFIGDYKHNAKITITPGGVIKLSTLVYKPPRNGPTIWEIGVPDRSAAEFHVPDPYPTLLNKLYSKLGTDKFRQYGLWDRYADLYPRDDLVYTVGKNKYSKDWFFAHVTRNTGNITFKPTIWKIIFEHGEDILSGKYTLQLALASATDAELQVRFNDPSIYPPHFTTGPIGGDNAIGRHGIHGLHRLFSIDVPSNLLMKGKNTIYLRQSLAITPLPGQINGMMYDYIRLERPPTPNT* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2755 691 CDD RGL4_C 492 684 - -
Lja4g2755 691 Gene3D - 487 683 - -
Lja4g2755 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 687 - -
Lja4g2755 691 Pfam Rhamnogalacturonate lyase family 62 248 IPR010325 -
Lja4g2755 691 Gene3D - 376 479 - -
Lja4g2755 691 SUPERFAMILY Galactose-binding domain-like 487 684 IPR008979 -
Lja4g2755 691 Gene3D - 55 355 IPR014718 GO:0030246
Lja4g2755 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 687 - -
Lja4g2755 691 Pfam Polysaccharide lyase family 4, domain III 490 683 IPR029411 -
Lja4g2755 691 Pfam Polysaccharide lyase family 4, domain II 404 476 IPR029413 -
Lja4g2755 691 SUPERFAMILY Starch-binding domain-like 377 478 IPR013784 GO:0030246
Lja4g2755 691 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lja4g2755 691 SUPERFAMILY Galactose mutarotase-like 59 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja4g2755 691 CDD RGL4_N 59 342 - -
Lja4g2755 691 CDD RGL4_M 380 480 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2755 Lja-Chr4 44192053 44201342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2755 64 686 Polysaccharide Lyase AT1G09890 53.834 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2755 K18195 - gmx:100776664 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2755 4 44192053 44201342 Lja4g2754 4 44130958 44139852 PCT