Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2754 ATGAAGATGGTGGATAAGAAAAGCAAACGATTTTTCTTCCTTTGGTGGTTTGGTATAACTGTGCAGCTCTGTTTCTTGCTCTGTTCCTGTGCTGAGAAGACATCATTAAGAAACCAATTATTTCCATGCATTCCGTTCATCTGCAGAAGAGGTTTAAAGGACATCAGCAGCACAAAATCAACATCTATTCATTCTGGACTCAATCTTAATACAGATAACCATCAGCAGTTGGTGGTTGATAATGGCATTGTTTCCGTCACTTTGTCAAGACCTGAGGGGTACGTCATTGGAATATCTTATAATGAAATTGACAACATCCTTGAAACTGAAAACGAAGAAAAAGATAGAGGGTACTTTGACGTCGTTTGGAATGAGCCAGGGAAAGCTAGTAGCTTTCAGAGAATCCATGGGACAAATTTTTCTGTTATAGCAGCTGATGGTGATTCCGTAGAGGTTTCATTTCTAAAGACATGGACATCGAGTGATTCAGATGTTCCCATAAACATAGACATAAGATACATTTTTCGAAGTGGAGATTCAGGATTTTATTCGTACTTAATATTCGATCGCCCTGAAGGATGGCCAGCTGTGGAGGTTGATCAAGTTAGGTTTGTTTACAAACTCAAGAAAGATAGGTTCAACTACATGGCTGTATCAGATGACAGGAGAAGAATGATGCCAACAATGAAAGATAGAGAAACTGGTCAAATTCTTGCTTACCCTGAAGCTGTTCGTTTAACCAAACCAACCAACCCAGAATTCAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACACAGACAACGGTGTTCACGGATGGATTAGTACTCTTGATTCTGATGATGATGATGCACCCACCATGGGTTTCTGGATGATAACACCAAGTAACGAGTTCCGCAATGCTGGCCCAATCAAGCAAGATCTTACTTCTCATGTTGGCCCCATCACACTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGTGAAACTTATAAGAAGGTTTTTGGCCCTGTATTTGTGTACCTTAACTCTGCTTCAATCGATGATGATGATGATACACTATCCCTCTGGTCAGATGCTAACCAGCAGTTATCCATTGAAGTCCAGAGCTGGCCTTATGATTTCCCTCAATCACAAGATTTCTTTCCACCCAGTCAACGAGGAGCAGTAACAGGAAGATTGCTAGTCCAAGATTGGTCAATTAAAGGAGGGAGATATCAATATTCTGACAATGCGTATGTTGGTCTAGCTTTGCCTGGAGAAGCAGGATCATGGCAGAAAGAAAGCAAGGGCTATCAGTTCTGGACTCGACCTGACACTAATGGATACTTCACAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGCTTGGGTCCCTGGCTTCATTGGTGATTACAAACGTAATGCTACAATCACCATCACACCAGGTGAAATAATCAATTTGAGTTACGTAGTATATAATCCTCCAAGAAATGGACCAACAATTTGGGAAATTGGTATCCCAGATCGCTCAGCTGCTGAATTTCATGTACCAGACCCTTACCCTATGCTCATGAACAAATTATACACCGAAAAACGCAAAGACAAGTTTAGGCAATATGGGTTGTGGGAGCGTTACACCGATTTGTATCCTAGAGATGACCTTGTTTACATTGTTGGTGATAGCAAGTATAGAAAGGATTGGTTTTATGCTCAAGTTACAAGACACATGGGAAATGAAACGTATGAGCCAACAACATGGCAGATTATATTTGAACATCGTAAAGACATATTTATCGGAAACTACACACTCCAAGTGGCTCTGGCTAGTGCTTCTGATGCTGAACTACAGGTCCGGTTCAATGACCCTAGCATAAATCCACCCCACTTTACAACAGGGCACATAGGAGGTGACAGTGCTATAGCAAGACATGGCATCCATGGATTGCATAGGCTGTTCAGCATTGATGTACCAAGTAATCTTCTTATGAAGGGAAAGAACACCATCTATCTGAGGCAGTCAAGAGCCAAAAATGCTTTCCAAGGAGTTATGTATGATTATATCCGTTTGGAAAAACCTCCAAATTCAAACACTTGA 2118 0.4093 MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRNQLFPCIPFICRRGLKDISSTKSTSIHSGLNLNTDNHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDVVWNEPGKASSFQRIHGTNFSVIAADGDSVEVSFLKTWTSSDSDVPINIDIRYIFRSGDSGFYSYLIFDRPEGWPAVEVDQVRFVYKLKKDRFNYMAVSDDRRRMMPTMKDRETGQILAYPEAVRLTKPTNPEFRGEVDDKYQYSCENTDNGVHGWISTLDSDDDDAPTMGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYLNSASIDDDDDTLSLWSDANQQLSIEVQSWPYDFPQSQDFFPPSQRGAVTGRLLVQDWSIKGGRYQYSDNAYVGLALPGEAGSWQKESKGYQFWTRPDTNGYFTINNVVPGDYNLYAWVPGFIGDYKRNATITITPGEIINLSYVVYNPPRNGPTIWEIGIPDRSAAEFHVPDPYPMLMNKLYTEKRKDKFRQYGLWERYTDLYPRDDLVYIVGDSKYRKDWFYAQVTRHMGNETYEPTTWQIIFEHRKDIFIGNYTLQVALASASDAELQVRFNDPSINPPHFTTGHIGGDSAIARHGIHGLHRLFSIDVPSNLLMKGKNTIYLRQSRAKNAFQGVMYDYIRLEKPPNSNT* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2754 705 CDD RGL4_N 70 363 - -
Lja4g2754 705 Gene3D - 505 698 - -
Lja4g2754 705 Gene3D - 69 375 IPR014718 GO:0030246
Lja4g2754 705 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 71 702 - -
Lja4g2754 705 CDD RGL4_C 510 698 - -
Lja4g2754 705 Pfam Polysaccharide lyase family 4, domain III 508 697 IPR029411 -
Lja4g2754 705 Pfam Polysaccharide lyase family 4, domain II 422 493 IPR029413 -
Lja4g2754 705 SUPERFAMILY Starch-binding domain-like 394 498 IPR013784 GO:0030246
Lja4g2754 705 Gene3D - 394 496 - -
Lja4g2754 705 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 71 702 - -
Lja4g2754 705 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lja4g2754 705 SUPERFAMILY Galactose-binding domain-like 505 698 IPR008979 -
Lja4g2754 705 CDD RGL4_M 398 495 IPR029413 -
Lja4g2754 705 Pfam Rhamnogalacturonate lyase family 66 258 IPR010325 -
Lja4g2754 705 SUPERFAMILY Galactose mutarotase-like 71 369 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2754 Lja-Chr4 44130958 44139852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2754 72 700 Polysaccharide Lyase AT1G09890 55.608 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2754 K18195 - gmx:100776664 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2755 4 44192053 44201342 Lja4g2754 4 44130958 44139852 PCT