Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2753 ATGAATATATTAAATAAGGGGCACAATGAGTCCGGTTGCTCTGCGAGGACCTCATTTAGGTTCTTTCCTCATATGTGTAGTATCTTATTGACATTTACGTACTTAAATGCGACAATGGAAAACGGCATCATTGGGGTCACTTTGTCAATACCGGATGGCAATATCATTGGAATATCATACAATGGAATAGATAATGTGCTTGAAGCTCGCAACACATATACAAATAGAGGGTACTTTGACATTGTTTGGAATGATTCCAACTATTTGGGATTCAGTGGGGATAAATTTTCTGTTATAGAGCAAAATGAGAATCAAGTAGAGGTTTCATTTTCAAGCACATGGAACATGGACAGATCAAATATACCCTTGAACATAGACCTAAGGTATATTTTACGCAGAGGTACTTCAGGATTATACATTTATGCTATACTTAAGCGTTCCGAAAAATTTCCTGCACTGGAGATTGATCACATTAGGTCTGTTTTCAGGCTACAACAAGACCGGTTCCATTACATGGCTATAGCAGATGATAGGCAGAGAGTGATGCCAACAGCAGAAGATAGAGCTACAGGGCAACGCCTTGATTATGATGAAGCTGTTCTCATAACTCATCCAAGTAATCCAGAACTGAAAGGAGAGGTGGATGACAAATATCAATACTCTTGTGAGAGCAAAGACAACAGACTTCATGGGTGGATTAACATGGACTCAGCAAGCAATAAGTCCGTGGGCTTCTGGATGATAACACCAAGTATTGAGTTCCGTAATGGTGGGCCAACCCACCAAGGTCTTACGTCTCATGTTGGTCCAGTCACCCTCAATATACTTCTTACCCACCACTATGCGGGGAAGGAGGTAGCCATGGCATTTCAGGAAGGGGAGCCCTTCAACAAAGTTTATGGCCCTTTTTTTGTGTATCTAAACTCGGTTCCAAATGGACATGATTCACAAGCACTATGGACTAATGCTGCACAACAGCTATCTGCTGAAATCAATAGTTGGCCCTATGATTTCCCTAAATCAATTGATTATTTCCAACCCAATCAAAGAGGAACAGTGGAAGGAACATTACTAGTCCAAGACCGGTACATTAATGGAGGGCGATCTGCATTCGCCAACAATGCTTATGTTGGTCTGGCTCTTCCTGGAGACATTGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGACAACAATGGCCGCTTCTCAATTAAAAATGTTGTACCAGGGGACTACAATTTGTATGCATGGGTACCTGGGATCTTTGGTGATTACAAATTTACCACCAATATAAACATCACACCAGGACGTGTGATCCAATTGGGTTCACTAATGTTCAATCCCCCAAGAAATGGACCTACCATATGGGAAATCGGCATTCCAGATCGCTCCGCGGCAGAGTTTTATGTACCAGATCCTTATCCTAACCTCATTAACCGAGTGTTCGTTGGGAAACCAAAACACAACTTTAGGCAATATGGTCTGTGGAGACGTTACAGTGAATTATATCCTAAGGGGGACCTAGTTTTCAATGTTGGTGCTAGTAATTATAGCAAAGATTGGTTTTACGCTCAAGTAACCAGGAATGTAAATGGCAAATTTCAGCCAACGACATGGGAGATTAGATTTCATCTTCTAGTTGTTATAAGTGGAAACTACACACTACAACTTGCTTTGGCCGAAGCCACAACTTCTAACTTGATGGTTCGAGTGAATGATCCTTTGACTCTTACTCCACTCTTCTCTACGGGATTAATAGGCCTAGACAATGCAATTGCAAGGCATGGAATTCATGGATTGCACTGGCCTTACAGCATTGAAGTACCTAGCCATCTATTGGTACAAGGACAGAACACAATCTATCTCAGGCAATCCAGAGGTGAAGGTCTTTTCGAAGGAGTTATGTATGATTACATCCGTTTGGAAGGACCTGAAACTTCGAGGATTTGA 1965 0.4168 MNILNKGHNESGCSARTSFRFFPHMCSILLTFTYLNATMENGIIGVTLSIPDGNIIGISYNGIDNVLEARNTYTNRGYFDIVWNDSNYLGFSGDKFSVIEQNENQVEVSFSSTWNMDRSNIPLNIDLRYILRRGTSGLYIYAILKRSEKFPALEIDHIRSVFRLQQDRFHYMAIADDRQRVMPTAEDRATGQRLDYDEAVLITHPSNPELKGEVDDKYQYSCESKDNRLHGWINMDSASNKSVGFWMITPSIEFRNGGPTHQGLTSHVGPVTLNILLTHHYAGKEVAMAFQEGEPFNKVYGPFFVYLNSVPNGHDSQALWTNAAQQLSAEINSWPYDFPKSIDYFQPNQRGTVEGTLLVQDRYINGGRSAFANNAYVGLALPGDIGSWQRQSKGYQFWTQADNNGRFSIKNVVPGDYNLYAWVPGIFGDYKFTTNINITPGRVIQLGSLMFNPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLINRVFVGKPKHNFRQYGLWRRYSELYPKGDLVFNVGASNYSKDWFYAQVTRNVNGKFQPTTWEIRFHLLVVISGNYTLQLALAEATTSNLMVRVNDPLTLTPLFSTGLIGLDNAIARHGIHGLHWPYSIEVPSHLLVQGQNTIYLRQSRGEGLFEGVMYDYIRLEGPETSRI* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2753 654 SUPERFAMILY Galactose-binding domain-like 456 647 IPR008979 -
Lja4g2753 654 CDD RGL4_M 349 449 IPR029413 -
Lja4g2753 654 Gene3D - 456 647 - -
Lja4g2753 654 Pfam Polysaccharide lyase family 4, domain III 459 646 IPR029411 -
Lja4g2753 654 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 651 - -
Lja4g2753 654 Pfam Polysaccharide lyase family 4, domain II 373 445 IPR029413 -
Lja4g2753 654 SUPERFAMILY Galactose mutarotase-like 44 311 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja4g2753 654 CDD RGL4_C 461 647 - -
Lja4g2753 654 Pfam Rhamnogalacturonate lyase family 38 214 IPR010325 -
Lja4g2753 654 Gene3D - 32 328 IPR014718 GO:0030246
Lja4g2753 654 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 651 - -
Lja4g2753 654 SUPERFAMILY Starch-binding domain-like 345 447 IPR013784 GO:0030246
Lja4g2753 654 Gene3D - 346 446 - -
Lja4g2753 654 CDD RGL4_N 35 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2753 Lja-Chr4 43923707 43929709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2753 37 651 Polysaccharide Lyase AT1G09910 53.686 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2753 K18195 - gmx:100792575 973