Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2745 ATGGCGCTAGTGGAGAGGAGAAAAAACCCAAAATTGGAATGGACGGGTGGTAACCGGGGAAAAGGGTTTCATCAATGCGAGGATGACGCGGTGGCGTCACCTTCACCGAGGGGTGTGTTTGAGGTTCCGATTTCGGGAACGGACTCAGACAGCACCGGAAGCAGCAACTACGGCGTGACACCACCGCCACAACGGCCGTCACACGTGAGAGAAGGTGGACAACAATGGAAGGCAATGATAGAGGCGTTGAAATTCAAGTCTGTTAGGAGATTCTCTTCCATTCCTTTGCTTGCTGCTAGCTATGAAATGTCCAGGAGGAGCCTGAGGAACAAGCTGGCGCGTATTCGAACCGCTCCCGTGGATGATGAGAATGATTGTGAAATTGATCTTGACGCCATTCCTACCAAGGCTTCTTGGAAGAACTTCAGTTATGCTGACCTCGTTGCCGCAACTGATGATTTCAACCCAGAGAACTTGCTTGGAAAAGGTGGTCATGCAGAAGTGTACAAGGGACGTTTACCTGATGGTCAAGTAGTAGCAGTAAAGAAGCTAATGAGGAACGAAAACGAAGCTGAGGACAAAGCTGGTGATTTCTTATCAGAGCTTGGGATCATTGCTCACATTAACCACCCAAATGCAACACGCTTAATTGGTTTCGGGATCGAAAGTGGACTCTACTTTGTTCTTCAATTCGCCCCACATGGAAGCCTTGCCTCTTTGCTCTTTGGAGGTGAATGCTTGGAGTGGAAGATAAGGTTCAAGGTAGCTGTTGGGGTAGCAAAAGGGTTGCAGTATCTTCATCATGATTGTCCAAGAAGAATCATTCACAGGGACATCAAAGCCTCAAACATATTACTCAATCACAATGATGAAGCAGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCGCACCATGTTGTGTTCCCAATTGAAGGCACATTCGGGTATTTAGCTCCAGAGTACTTCATGCATGGACTTGTGGATGAAAAAACTGATGTTTTCGCCTTTGGGGTTTTGTTACTGGAGCTCATAACAGGTCGTCGTGCCGTTGATTCTAATAGCAGGCAAAGTCTTGTGATATGGGCCAAACCATTGTTGGACGCAATGATGGTGAAGGAACTAGCAGACCCCAGAATAGAAGAGCAATTTGATCCCGTGGAAATGATGCGCGCCATTGCAACGGCTTCCATGTGTGTCCACCACAAGCCCACAAGACGGCCATTAATGAATCAGGTTGTGCAGCTACTGAAGGGTGAAGAGGTGGCTATTGAACTCAGTCAGAAATCAATAGCTCCAAGGTCACTCTTGTTAGATGCATGTGACTTGGAAGATTATACTTGTTCTAATTATTTGAACGACCTCAATCGTCACAAGCAATTAATCATGGAGATGTGA 1410 0.4667 MALVERRKNPKLEWTGGNRGKGFHQCEDDAVASPSPRGVFEVPISGTDSDSTGSSNYGVTPPPQRPSHVREGGQQWKAMIEALKFKSVRRFSSIPLLAASYEMSRRSLRNKLARIRTAPVDDENDCEIDLDAIPTKASWKNFSYADLVAATDDFNPENLLGKGGHAEVYKGRLPDGQVVAVKKLMRNENEAEDKAGDFLSELGIIAHINHPNATRLIGFGIESGLYFVLQFAPHGSLASLLFGGECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNHNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELITGRRAVDSNSRQSLVIWAKPLLDAMMVKELADPRIEEQFDPVEMMRAIATASMCVHHKPTRRPLMNQVVQLLKGEEVAIELSQKSIAPRSLLLDACDLEDYTCSNYLNDLNRHKQLIMEM* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2745 469 MobiDBLite consensus disorder prediction 1 72 - -
Lja4g2745 469 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 15 468 - -
Lja4g2745 469 ProSiteProfiles Protein kinase domain profile. 154 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2745 469 SMART serkin_6 154 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2745 469 MobiDBLite consensus disorder prediction 45 62 - -
Lja4g2745 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Lja4g2745 469 PANTHER OS08G0249100 PROTEIN 15 468 - -
Lja4g2745 469 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524
Lja4g2745 469 SUPERFAMILY Protein kinase-like (PK-like) 138 426 IPR011009 -
Lja4g2745 469 Gene3D Transferase(Phosphotransferase) domain 1 233 436 - -
Lja4g2745 469 Pfam Protein kinase domain 157 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2745 469 CDD STKc_IRAK 160 423 - -
Lja4g2745 469 Gene3D Phosphorylase Kinase; domain 1 125 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2745 Lja-Chr4 43621671 43626730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2745 114 444 Trihelix Transcription Factor Family AT5G38560 40.351 2.99e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja4g2745 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2745 - - lja:Lj0g3v0135119.1 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2745 4 43621671 43626730 Lja4g2745 4 43621671 43626730 PCT