Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2743 ATGGCCGGTGCCACAAACTGGCTTACGTTTTCTTTGACGCCAATGGAAATAATGCTGAGGTCCTCCTCCACAGACTCCCAATTCCTTCAATACGACACCGCTTCATCCTCTCACTGTTTCCTCGATAACTTCTATGCCAATGTGTTGACAAACCCCAAGTCTGAGATGCTGAACCAGAACGAAATGCAGAGGGTAACTGAAGGTTCGATTCTCACAAGCTTGATGGATGATTCTTCACCGCCACAGATTGAAAATCAGCCCCCAATGGCGGTGGTGTCGAAACTGGAAGATTTCTTCGAGAGCCACCAAGGCGAGGTGATGCAAGGTTCAGGTTCTTCTTCTTCTTCACTCTCTCAAATCTACGAGCATGTGCCTCCACCTCCTGGATTCTTCAACGGCGAGCAGGATCTGAAGGCGGCGGTTGATGTTGCTGCTGAGTTTCGAGCCAAGTTGGATGACTCGGTTGAAATCCCCAAAAACGACGTCGTACCCGGCGGCGAGTTCGGTGTTAACTCGGCTGAGGGTAATAAGGACGAAACGCTGTCTGTGGTTGCTGTGAAGAGTTCTGATGAGAAGGCCGTTGTTGTTGTTGCTGCTGCGGCAGATTCTGATGCCTCGAAGAACGTTGTTGCTCACACCTTTGGCCAACGAACTTCAATTTACAGAGGGGTCACGAGGCACCGATGGACAGGTAGATATGAAGCGCATCTATGGGATAATAGCTGCAGGCGAGAGGGTCAAGTCAGGAAAGGCCGTCAAGTGTATTTGGGTGGGTATGACAATGAAGAAAAGGCAGCGAGAGCTTATGACTTAGCAGCTCTCAAGTACTGGGGACCAACAGCTACCACAAACTTTCCTGTTACCAGTTATACAAAGGAATTGGAGGAGATGCAACATGCAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCCATATACAGGGGTGTTACAAGGCACCATCAACAAGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCTGGAAACAAAGATCTATATCTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATATGACATTGCAGCTATTAAGTTTAGAGGTGCAAGTGCTGTGACCAATTTTGAGATGAGTAGGTATGATGTGGAAACCATATTGCAGAATTCTCTTCCAGTTGGTGGGGCATCAAAGCGCTTGAAGCTTTCCCAAGAATCAGAGCAGAAGGCTCCACCTGTGAGTAGCAGTGAACAACCTCACTCCACAAACTTGAGTATCAGCAGCATCAATTTCTCAACAATTGATCCAGTTGCCGCTATGTCGCCACCTTATGATCCTTCTTCAGCATTTTATCCTCACAACAACCTCTTCTACCATTTTCATCCTACCAGCACTGTCAATGCCACAGCTGAGTCTGCTGCAAATTTCACCAATGCACCCACCCCACTGAGTTCTCTGCCACCAGGATCTGAGTTCTTCATATGGCCTAATCATCAGTCCCATTGA 1515 0.4792 MAGATNWLTFSLTPMEIMLRSSSTDSQFLQYDTASSSHCFLDNFYANVLTNPKSEMLNQNEMQRVTEGSILTSLMDDSSPPQIENQPPMAVVSKLEDFFESHQGEVMQGSGSSSSSLSQIYEHVPPPPGFFNGEQDLKAAVDVAAEFRAKLDDSVEIPKNDVVPGGEFGVNSAEGNKDETLSVVAVKSSDEKAVVVVAAAADSDASKNVVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQVRKGRQVYLGGYDNEEKAARAYDLAALKYWGPTATTNFPVTSYTKELEEMQHAGKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVETILQNSLPVGGASKRLKLSQESEQKAPPVSSSEQPHSTNLSISSINFSTIDPVAAMSPPYDPSSAFYPHNNLFYHFHPTSTVNATAESAANFTNAPTPLSSLPPGSEFFIWPNHQSH* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2743 504 ProSiteProfiles AP2/ERF domain profile. 220 286 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 CDD AP2 321 382 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 Pfam AP2 domain 322 372 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 Pfam AP2 domain 220 278 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 Gene3D AP2/ERF domain 322 382 IPR036955 GO:0003700|GO:0006355
Lja4g2743 504 Gene3D AP2/ERF domain 220 288 IPR036955 GO:0003700|GO:0006355
Lja4g2743 504 SUPERFAMILY DNA-binding domain 321 382 IPR016177 GO:0003677
Lja4g2743 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 500 - -
Lja4g2743 504 MobiDBLite consensus disorder prediction 410 425 - -
Lja4g2743 504 MobiDBLite consensus disorder prediction 401 425 - -
Lja4g2743 504 SUPERFAMILY DNA-binding domain 219 287 IPR016177 GO:0003677
Lja4g2743 504 CDD AP2 219 288 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 ProSiteProfiles AP2/ERF domain profile. 322 380 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 PRINTS Ethylene responsive element binding protein signature 362 382 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 SMART rav1_2 322 386 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 SMART rav1_2 220 292 IPR001471 GO:0003700|GO:0006355
Lja4g2743 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2743 Lja-Chr4 43610702 43616487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2743 67 412 AP2-EREBP Transcription Factor Family AT5G10510 55.309 1.05e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja4g2743 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2743 K09285 - gmx:100777168 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2743 4 43610702 43616487 Lja4g2743 4 43610702 43616487 PCT