Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2731 ATGGATTTTTTATTTTTTAAATTGTATTTGAGGTTGAATGCATCTTCATTTGGTGTGTGTTTGTTTTTGTTGCTTTGGTTTTTGATAGAGATGAAGAGGTCCAGAGATGATGTGTACTCACAACCCAAACGGCCCATAGTGTCCTCTAGAGGAGAACCCTCGGGACAACCCCAGATGATGAGTGGTGGTCAGAAACTGACCACAAATGATGCCTTAGCATATCTCAAGGCAGTAAAGGAAATGTTTCAAGATAATAGGGAAAAGTATGATGACTTTTTGGAAGTTATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTGAAGGATCTCTTTAAAGGGCATAAAGATCTAATTTTGGGATTTAATACCTTCTTGCCCAAGGGATATGAAATCACACTTCCATTAGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTTCTGAAGCAATAAATTTTGTGGGCAAGATTAAGACACGTTTTCAAGGCAATGATCGTGTTTATAAGTCGTTTCTAGACATATTGAATATGTACAGAAAGGAAACCAAGTCTATCAACGAGGTTTACCAGGAGGTTGCAGCACTTTTCCAGGACCATGCTGATCTACTTGAGGAGTTTACACATTTTCTTCCTGATACTTCAGGAACAGCCTCTACTCATTATGCGTCTGCTCGAAATTGTCTCCTTCGTGATAGGAGTTCTGCAATGCCAACAGTGAGGCATATGCATGTTGATAAGAGAGAAAGGAGCATGGCTTCACATGGTGATCGTGACATTAGTGTTGATCATCCTGATCCAGAACTTGATAGGGGTTTGACAAGGGCTGAAAAGGAGCAGAGAAGGCGTGGTGAGAAGGAAAAGGACTATAGAGAAGAGAGAGACAGGAGAGAACGGGAAAGGGGTGATAGAGATTTTGATCATGATGTTAGTCGGGAACATTTATCTCACAAGCAAAAAACTAGCTGTAAGGCTGAAATCTCAGGTGCTGAACCATTACATGATGCAGATGAGAATTTTGGCATGCGCCCTAACGCTTGTGAGGATAAAAGTTCTTTGAAAAATATGTGGAGTCAAGTGCTTGCTTTCCTTGAAAGAGTCAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGTCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATGCTGATGTGATGGAGGGATTTGATGAATTTTTGACACAATGTGAGAAGAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTCATGGAATGAAGGACATGTACTGAAACCGGTGAAGGTAGAGAACAGGGACCAAGATCGTGATAGGGATGATGGGATAAAAGAAAGGGACCGTGAATGCCGAGAAAGAGACAAATCTGCTGCAATTGCTAACAAGGATGTTTCAGTTCCTAAGACATCTCGATATGCCAGCAAGGATAAGTATGTAGCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACAGTGCACTCCAAGTTACCGTCTTCTACCAAAAAATTACCCAATACCATCAGCTAGCCAGAGAACTGAGCTAGGTGCAGAAGTATTGAATGATCACTGGGTTTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAGCACATGCGCAAAAATCAGTATGAGGAGAGCCTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATTTTGTTAGAGTCTGTAAATGTGAGCATTAAGCGAGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATACAATCAAAGGAGACAGTCAAATTCGTATTGAGGATCACTTAACAGCTCTAAACCTTAGATGCATTGAGCGATTATATGGTGATCATGGGCTTGATGTGATGGATGTGTTAAGGAAGAATGCACATTTAGCTTTGCCAGTCATATTGACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATTCGCAAAGAACTATCACAAATCACTTGACCACCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGTTTGAGTGCTAAAGCCCTACTGACAGAGATTAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTGCTTCTTGCAATTGCTGCTGGAAATAGAAGGCCTATTCTTCCTAACTTGGAATTTGAGTATTCGGATCCAGAGATTCATCAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAATTTGTACAACTGAACAATTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAATTCATGCTTGGCGTTCCTTCTCGACCCCACGGTCCCGAGGATACAGAAGATGTTGTCAAGGATAAAAATAATTCTACTAGAAGTGACACTGCAAGTGCTGCTGAGGGTGATGGCAGTCCTGGTGGTGGTGCTACCATAATGAATCCAAAGAATCTTAACACTAACAGAAATGGAGATGAGAGTGTTCTTCTAGAACGATCAAGTTCTTGCAAAGAATGGGAAACAAATGGGGATGGTGGGATTAAGGAGGATAATTGTTTTGAATTAGACCGTACCACACGTAAAACTGAAACTTTGGGAAGTGGTTCACAACAAGGTAAAATTCATATACGTGCATCTGTGCTTGATGATGTATCAAGAGTCAATAAACAAGATCATTCCATTGAACGGTTGATGAATGCTAATGTCTCACTGTCCTCTGGAGTGGAGCAAAGTAATGGAAGAACATATGTGGATAATGCATCAGGACTTACAGCAACTCCATCTAGACCTGGTAATATTTCTGGCGAGGGAGGACATGAATTACCGTCATCAGAGGGGGTTGATTCTACAAGACCAGTTACATCTACAATTGGGGCCATCATCGAAGACACCAAAGGTCACAGGTATAATGAAGAATCAGTTAGACACTTGAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGACTTTGAAGAGGATAACTTGGCAGTTTATGGAGATGTTAATTTGAAGGCAGTTCAAAAGGGAAAAGATGGTAGTACGAGTCAACAATACCAAAATAGACACGGAGAAAAAAGTTGTGGTGAACCCGAAGGAGAAAATGACGGTGATGATGAACATGAAGAAAGTCCTCATAGATCATCAGATGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACTGAATCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAACATGAGGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGATGAAGGAGATGGAGCCTCATTGCGATATTCAGAGCGTTTTCTTCTCACTGTAAAGCCTCTGGCAAAACATGTTCTACCAGTGTTGCGTGAGGAAAAAAGGAATGCTCAAGTTTTTTATGGAAACGATTCCTTTTATGTGCTGTTTAGGCTTCATCAGATATTGTATGAGAGGATTCAAACAGCAAAGGTAAACTCATCTTCTGAAAAGAAATGGAGAGCTTCTAATAATACTAGCTCTACAGATCAATATGGCAGGTTCATGAATGCCCTATACAATTTACTGGATGGTTCTTCTGATAATACAAAATTTGAAGATGACTGTCGAGCTATTATTGGAATTCAGTCGTACGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGATGAGATGGATAACAAGCTTCTTCAACTATTTACATATGAGCAATCAAGAAAACCTGGAAAATTTGTTGATTTGGTTTATCATGAAAATGCGCGTGTTCTTCTTCCTGATGAAAACATATATCGTATTGAATGTTCAGCTGCACCTACCCGATTGTCTATTCAACTCATGCGCTATGGACATGATAAACCTGAAGTGGCTGCCGTAACAATGGATCCTAATTTTTCAGCATATCTGCACAATGATTTCCTGTCTGTTGTCCCTGATAAAAAGGAAAAGTCTGGAATTTTCTTGAAAAGGAATAAACGGAAATATGCAAGCATTGATGATGAACATTCAAGTCAGGTCATGGATGGACTACAAGTCATCAATGGTCTGGAGTGTAAGATAGCTTGCAATTCGTCCAAGGTCTCATACGTTTTAGATACTGAAGACTTTTTGTTTCGAACAAGACGAGAAAGGAGAACCTTGCACAAGGACAGTTCATGCCATGAACAGGCAAAGACTTCAATCATTTGTTCAAGCAGAGCTCAGCGGTTCTGCAAATTGTTTTCCATTAATTAA 4350 0.3984 MDFLFFKLYLRLNASSFGVCLFLLLWFLIEMKRSRDDVYSQPKRPIVSSRGEPSGQPQMMSGGQKLTTNDALAYLKAVKEMFQDNREKYDDFLEVMKDFKAQRIDTTGVIARVKDLFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFSEAINFVGKIKTRFQGNDRVYKSFLDILNMYRKETKSINEVYQEVAALFQDHADLLEEFTHFLPDTSGTASTHYASARNCLLRDRSSAMPTVRHMHVDKRERSMASHGDRDISVDHPDPELDRGLTRAEKEQRRRGEKEKDYREERDRRERERGDRDFDHDVSREHLSHKQKTSCKAEISGAEPLHDADENFGMRPNACEDKSSLKNMWSQVLAFLERVKEKLRNPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYADVMEGFDEFLTQCEKNEGFLAGVMNKKSSWNEGHVLKPVKVENRDQDRDRDDGIKERDRECRERDKSAAIANKDVSVPKTSRYASKDKYVAKPINELDLSNCEQCTPSYRLLPKNYPIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDILLESVNVSIKRVEELLEKINANTIKGDSQIRIEDHLTALNLRCIERLYGDHGLDVMDVLRKNAHLALPVILTRLKQKQDEWARCRADFNKVWAEIFAKNYHKSLDHRSFYFKQQDTKSLSAKALLTEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYSDPEIHQDLYQLIKYSCGEICTTEQLDKVMKIWTTFLEFMLGVPSRPHGPEDTEDVVKDKNNSTRSDTASAAEGDGSPGGGATIMNPKNLNTNRNGDESVLLERSSSCKEWETNGDGGIKEDNCFELDRTTRKTETLGSGSQQGKIHIRASVLDDVSRVNKQDHSIERLMNANVSLSSGVEQSNGRTYVDNASGLTATPSRPGNISGEGGHELPSSEGVDSTRPVTSTIGAIIEDTKGHRYNEESVRHLKSEREEGELSPNGDFEEDNLAVYGDVNLKAVQKGKDGSTSQQYQNRHGEKSCGEPEGENDGDDEHEESPHRSSDDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEAEGMADANDDEGDGASLRYSERFLLTVKPLAKHVLPVLREEKRNAQVFYGNDSFYVLFRLHQILYERIQTAKVNSSSEKKWRASNNTSSTDQYGRFMNALYNLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHDKPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQVINGLECKIACNSSKVSYVLDTEDFLFRTRRERRTLHKDSSCHEQAKTSIICSSRAQRFCKLFSIN* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2731 1449 Gene3D Paired amphipathic helix 358 430 IPR036600 GO:0006355
Lja4g2731 1449 Coils Coil 282 302 - -
Lja4g2731 1449 MobiDBLite consensus disorder prediction 792 843 - -
Lja4g2731 1449 MobiDBLite consensus disorder prediction 796 810 - -
Lja4g2731 1449 SUPERFAMILY PAH2 domain 363 428 IPR036600 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 938 1015 - -
Lja4g2731 1449 Pfam C-terminal domain of Sin3a protein 1163 1409 IPR031693 -
Lja4g2731 1449 Gene3D Paired amphipathic helix 70 132 IPR036600 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 1029 1129 - -
Lja4g2731 1449 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 37 1425 - -
Lja4g2731 1449 Gene3D Paired amphipathic helix 148 221 IPR036600 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 1030 1045 - -
Lja4g2731 1449 SUPERFAMILY PAH2 domain 146 219 IPR036600 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 450 480 - -
Lja4g2731 1449 Pfam Sin3 family co-repressor 518 610 IPR013194 -
Lja4g2731 1449 SMART hdac_interact2seq4b 516 616 IPR013194 -
Lja4g2731 1449 ProSiteProfiles PAH domain profile. 64 134 IPR003822 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 42 64 - -
Lja4g2731 1449 ProSiteProfiles PAH domain profile. 349 428 IPR003822 GO:0006355
Lja4g2731 1449 ProSiteProfiles PAH domain profile. 150 220 IPR003822 GO:0006355
Lja4g2731 1449 PANTHER SIN3B-RELATED 37 1425 IPR039774 GO:0003714
Lja4g2731 1449 MobiDBLite consensus disorder prediction 249 331 - -
Lja4g2731 1449 Coils Coil 589 609 - -
Lja4g2731 1449 Pfam Paired amphipathic helix repeat 87 131 IPR003822 GO:0006355
Lja4g2731 1449 Pfam Paired amphipathic helix repeat 381 425 IPR003822 GO:0006355
Lja4g2731 1449 Pfam Paired amphipathic helix repeat 174 217 IPR003822 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 984 1006 - -
Lja4g2731 1449 MobiDBLite consensus disorder prediction 452 480 - -
Lja4g2731 1449 SUPERFAMILY PAH2 domain 63 133 IPR036600 GO:0006355
Lja4g2731 1449 MobiDBLite consensus disorder prediction 1088 1116 - -
Lja4g2731 1449 MobiDBLite consensus disorder prediction 1061 1075 - -
Lja4g2731 1449 MobiDBLite consensus disorder prediction 249 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2731 Lja-Chr4 42381363 42398686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2731 56 146 WRKY Transcription Factor Family AT4G12020 59.574 3.69e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g2731 Sin3a_C 2e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2731 K11644 - gmx:100781798 2193.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2731 4 42381363 42398686 Lja4g2731 4 42381363 42398686 ECH