Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2730 ATGCCGTCTCACGCGGATCTGGACCGTCAAATCGAGCACCTGATGGAGTGCAAGCCTCTGCCGGAGCAAGAGGTGAAGGCGCTGTGCGATCAGGCGAGGGCGATTCTTGTTGAGGAGTGGAACGTGCAACCGGTCAAGTGCCCCGTCACGGTTTGCGGCGATATTCACGGCCAGTTCTACGATCTCATCGAGTTGTTTCGGATAGGAGGGAGCGCCCCTGATACCAATTACCTATTTATGGGTGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTCTGGTGGCCTTGAAAGTCCGTTACAGAGATAGAATTACATTAACCAGGGGAAATCATGAAAGCCGTCAAATTACTCAAGTGTACGGCTTCTATGATGAGTGCTTGAGAAAATACGGAAATGCGAATGTCTGGAAATACTTTACTGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCGTTGGATACACTGGATAACATCAGAGCATTGGATCGTATACAGGAGGTTCCGCATGAAGGACCGATGTGTGATCTCTTGTGGTCTGATCCTGATGATCGGTGTGGGTGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTCTCTCTGATATCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTATTTAGTGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCTGCTCCCAGGCAAATTGAGCCTGACACTACGCGCAAGACCCCAGATTATTTTTTGTAA 921 0.468 MPSHADLDRQIEHLMECKPLPEQEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITLTRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Lja4g2730 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Lja4g2730 306 SUPERFAMILY Metallo-dependent phosphatases 6 293 IPR029052 -
Lja4g2730 306 Gene3D - 2 306 IPR029052 -
Lja4g2730 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Lja4g2730 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Lja4g2730 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 306 - -
Lja4g2730 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 - -
Lja4g2730 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2730 Lja-Chr4 42356235 42360382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2730 20 225 Calmodulin-binding Proteins AT5G63870 34.677 3.94e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2730 K04382 - jre:108989812 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2730 4 42356235 42360382 Lja4g2730 4 42356235 42360382 ECH