Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2728 ATGGCTACTTCAGAGGATGATGGGGGTGAACCAAAATTTCCTGAGCCACTTTTCGTAGAAGATGAAGAGGAAGAGCACGAGGATGACGAAGAGGTAGTGGAAGACAATGAATTGGGATGCAGTGGTGACGATACAGATTCAGATAGTTCAGATGATGAATTCAGGAATGTGCTTACCTTAACAGCTGATGAGATACGAGCTTTAACGTTTTGCAGTGAGTCTAATGCATACACATTTTACTGTGCCTACGCGAAGGGAAAGGGATTTGTGGTTAGAAAAGATGCATGTGAACGAGATTCTAATAACAAAGTTGTAATGCGAAAATTTGTATGCAATAGGGAGGGGTTAAGGGAACCAAAGTACTTCATTATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCACTAACTGTCAAGCAAGACTCAGGATACGGTACGATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCTGTCGGTATATGTCCCTGTGATTAATGCTTACCGTACAATTAGTGAAGGAGACAAAGCTCAGGCAGAAAGTCTTCACGCATATGGTGTCAGAACCTGTCATATCATGGGTTATTTGACGGCACAGAAGGGGGATATTCTAAATGTTGAGGAATTTGAGGAACACTGGCAGAACATGGTTTCTAAGCACGGCCTACAGAAAGACAAGTGGGTTTTAAGTGTGTATGAGAAAAAGGAATCGTGGTGCTCCGCATATCTCCGTGATCAGTTTTTTGCTGGGATACGGACAACATCAATATGTGAAGCCATAAATAGTCGTATCAAGGTCTATGTCAAGAGAAGAATTAGTCTTATAGACTTCATGCAAACCATTGAGCATGCTTTAAGAGGGTACAGATTTAATGAGTTGCGAGCTGATTACGGTAGTATTTACACTGAACCTGTTTTGACTACCACTCTGTACAAATTTGAAAGTGAAGCTGCAAAACTGTACACGCGTGAAATTTTTAAAGAAGTAAGAAATCAAATTGAGCGTGTGGCTCCATTGAATTATAAAGATAAAACAGCGGATGGAGATGAAGTGAGGTACGAAATGTTCCATTATAGGAGGCCAGAAAGAACCATTGAAGTAGTCTACAACAAGAAAAGTAATCAATTTTACTGTCCATGCCGGCTATTTGAATCACGTGGAATACCATGTTCACATATTTTCAACAGCATGAAATATGAGCTCATGGAAACCATTCCTAAAACACTTATGCTTAGCAGGTGGGGACGGTATGCAAAATCTGAATACTTGTCGGCAACATCCACCGATGAGGTGGACAGTTCTGTAATGAAGACAGCACGATTTGGGGCTATATCTGCTGCGTGCAACGGGCTCTCCGTCTTAGGTTCTGACAATCCTGGGCTCTTCACTGACATGATGAATGATATTTTGAGGTTGACGACGAAGTATAAGAATAAGATACTCAAACAAGGCGGACATGTCAACGGGACCAACGACATTCGTGATCCCAATATCGTCAAATCTAAAGGACGCCAACCTGCAACCCTGAAACCAAAGAAGAATAAAAAGAATAAGAAACAAGCAAGGTGTTCAAACTGTCATAAGCTTGGTCACAACGCAAGGACTTGTTCTACCCTCGTTGGTGGAGAAGATAATGATTTGGAGGGTGATGAGCGATCCACGCAGGAGGATGAGGGCAACGTAAATGACGATAGCACGGGCCAGCCAACCGAGGCCACGACGCAGCCAAGTAGATCCAATTCTAATGTAATAAACCATTTGGTTGGTCGTCGAGGACATAAAGCCAAGAAACAAAAGACAAAGAACTCGAATCTCTGTTCAGTTAATGAAAAGGAAAACCTAACCCCCGCAACTGATAAAGATGAAAGTCAGATGGGCTCACGTGCTTTATCCCCACAAAATTCAACAATGCAACCGCTTAATGCGAGGTATTACGTCTTTTGGATACAACCAACCCAGACAGCTGCTTCTTGTGGTATAGCTCATCCCGGATTTCATTACGTTGTCCCTCAATATCCAACACGGCCACCTAACTTAGCCGTTGGTACGGGTATGCCAGCCCAGGTCAACTTCCCACATGGTTATGGTGGATGGATACCAGACCCCAACATTCAATATGCTTATGGTCAACCCATAAATGGTCCTCAAAATGCTCCTCAATGCTATGGTTATGTTCCGATATTGCCCCGAAACTATCAGGTTTTGTTCAAGTTATTCAGTGTTTGTAAAATTTTTAATATATCCATGATATTCCTCACCAGTGAAATTTTTGATAATCTACTCAATCGCAGAATCTATCTGCTTGTCAACCTATTCATACTCCTGTTGTTAGAGGACATAGCCAACACCAAGGCCCCCGTAGCCAAATGCAACATGATGCGGCGAAGAAAAAGGCTGGTACATAAGCAAATGCAGTTTGATGTGCAATCGGACGCTGAAAATATGTCCATGTCAAAAACCACTGTTGAATCCAAAGTAGTCACTATTCTGCGGGCCAAAGCGGCTTGTAGATGA 2544 0.4273 MATSEDDGGEPKFPEPLFVEDEEEEHEDDEEVVEDNELGCSGDDTDSDSSDDEFRNVLTLTADEIRALTFCSESNAYTFYCAYAKGKGFVVRKDACERDSNNKVVMRKFVCNREGLREPKYFIMDRQRAHRSLTRTNCQARLRIRYDNKKCQWGVVGFEEKHNHELTLSVYVPVINAYRTISEGDKAQAESLHAYGVRTCHIMGYLTAQKGDILNVEEFEEHWQNMVSKHGLQKDKWVLSVYEKKESWCSAYLRDQFFAGIRTTSICEAINSRIKVYVKRRISLIDFMQTIEHALRGYRFNELRADYGSIYTEPVLTTTLYKFESEAAKLYTREIFKEVRNQIERVAPLNYKDKTADGDEVRYEMFHYRRPERTIEVVYNKKSNQFYCPCRLFESRGIPCSHIFNSMKYELMETIPKTLMLSRWGRYAKSEYLSATSTDEVDSSVMKTARFGAISAACNGLSVLGSDNPGLFTDMMNDILRLTTKYKNKILKQGGHVNGTNDIRDPNIVKSKGRQPATLKPKKNKKNKKQARCSNCHKLGHNARTCSTLVGGEDNDLEGDERSTQEDEGNVNDDSTGQPTEATTQPSRSNSNVINHLVGRRGHKAKKQKTKNSNLCSVNEKENLTPATDKDESQMGSRALSPQNSTMQPLNARYYVFWIQPTQTAASCGIAHPGFHYVVPQYPTRPPNLAVGTGMPAQVNFPHGYGGWIPDPNIQYAYGQPINGPQNAPQCYGYVPILPRNYQVLFKLFSVCKIFNISMIFLTSEIFDNLLNRRIYLLVNLFILLLLEDIANTKAPVAKCNMMRRRKRLVHKQMQFDVQSDAENMSMSKTTVESKVVTILRAKAACR* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2728 847 MobiDBLite consensus disorder prediction 494 532 - -
Lja4g2728 847 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Lja4g2728 847 MobiDBLite consensus disorder prediction 1 52 - -
Lja4g2728 847 SUPERFAMILY Retrovirus zinc finger-like domains 517 551 IPR036875 GO:0003676|GO:0008270
Lja4g2728 847 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 175 IPR031052 GO:0006355
Lja4g2728 847 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 217 451 - -
Lja4g2728 847 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 29 175 - -
Lja4g2728 847 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 217 451 IPR031052 GO:0006355
Lja4g2728 847 MobiDBLite consensus disorder prediction 516 532 - -
Lja4g2728 847 MobiDBLite consensus disorder prediction 547 645 - -
Lja4g2728 847 MobiDBLite consensus disorder prediction 570 596 - -
Lja4g2728 847 ProSiteProfiles Zinc finger SWIM-type profile. 373 411 IPR007527 GO:0008270
Lja4g2728 847 MobiDBLite consensus disorder prediction 611 645 - -
Lja4g2728 847 MobiDBLite consensus disorder prediction 17 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2728 Lja-Chr4 42264888 42268255 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g2728 FAR1 1.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2728 - - aip:107640898 311.227