Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2725 ATGAAGGAGAGAAAATTTCCCATGGATCAATCAGCCATAGATATGTTCTTATGGAACCAACATAGCTCTTTCTCTCACCAGCCACTAGTAGAGAATAACATAGCAAGGAGCAACAATGTTGCAAGTGTTTTTGGTGAGGAGTTCTCCAATTTTCCTTTTTCTGGCGGTTCGACCCAAGGGCTTCTCTGGCCCAACACTCAAGAGTCATGCTTTGTTGATGAGTTTTTGCCAAAGGAAGAGCCTTTGGAGTGCACAAGCATCAACCAAAACCCCATGTTGTGTATGACAGTCATGGATGTTACACCCATCAATGGGAAAGGGGTTGGAAGAAGGAGTACTAAGAAAGAGTCTTCTATGCCTTTGATCAAAGGACAGTGGACCTATGAAGAAGACATGAAATTGATTAGTTTGGTGAATCAATATGGGGAAACAAAATGGGGTAAAATAGGTGATATGTTAGAAGGAAGGGCTGGCAAGCAATGTCGCGAGAGATGGTATAATCATTTGCGCCCTGACATTAAGAAAGGTAGTTGGAGTGAAGAAGAAGAGAAGGTCCTTGTAGCTACCCATGCCAAGATGGGAAACCGTTGGGCTGATATAGCAAACCTTATTCCAGGAAGAACCGAGAACGGCGTAAAGAACCACTGGAATGCAACTAAGAGGAGGCTAAATTCAAACAGAAAGAACAAGAAAGCTGCACAGAGCTCTAATGGAAAACCACACTCTTCCATACTTGAAGACTATATCAGAAGCAAGACTCTCACTTGCACCAATCCCACAACTTCTCCCATGTCCTCTGTCTCGAACAGAGCACTACTACTCTTTGAAGACCTTTCATCAAACAGTTACGATGCAAACCTTGAATTCCTAGATCCCTCTGATTCTATTGACACTGAGGTACTCTTCATGCAAAAGATGTTCAAAGAGAATCAGAATCAGGAATCATTTTTCAATGTTGAAGCTTCTAATCTTAACAAGATGACTTCAACCTCTCACTTGGCCTTTTGTCAAACAGATGGTGTTCATGATGTGACACAGTGTGGCTTTGTTTACCCCTTCCAATATCCAGATAACATGCACTTGGGTGATAATAATTTCCTTCATAGAGAGACTGTTACCCAGCCTATGAACTACCTCCCTTCAGATCTTTATGGCTCTCCCTTGTTCAATCTGTAG 1176 0.4218 MKERKFPMDQSAIDMFLWNQHSSFSHQPLVENNIARSNNVASVFGEEFSNFPFSGGSTQGLLWPNTQESCFVDEFLPKEEPLECTSINQNPMLCMTVMDVTPINGKGVGRRSTKKESSMPLIKGQWTYEEDMKLISLVNQYGETKWGKIGDMLEGRAGKQCRERWYNHLRPDIKKGSWSEEEEKVLVATHAKMGNRWADIANLIPGRTENGVKNHWNATKRRLNSNRKNKKAAQSSNGKPHSSILEDYIRSKTLTCTNPTTSPMSSVSNRALLLFEDLSSNSYDANLEFLDPSDSIDTEVLFMQKMFKENQNQESFFNVEASNLNKMTSTSHLAFCQTDGVHDVTQCGFVYPFQYPDNMHLGDNNFLHRETVTQPMNYLPSDLYGSPLFNL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2725 391 Pfam Myb-like DNA-binding domain 126 184 - -
Lja4g2725 391 MobiDBLite consensus disorder prediction 218 244 - -
Lja4g2725 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 169 IPR017930 -
Lja4g2725 391 MobiDBLite consensus disorder prediction 229 244 - -
Lja4g2725 391 Gene3D - 176 244 - -
Lja4g2725 391 PANTHER MYB TRANSCRIPTION FACTOR 65 390 - -
Lja4g2725 391 SMART sant 122 171 IPR001005 -
Lja4g2725 391 SMART sant 174 222 IPR001005 -
Lja4g2725 391 SUPERFAMILY Homeodomain-like 120 216 IPR009057 -
Lja4g2725 391 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Lja4g2725 391 CDD SANT 126 169 IPR001005 -
Lja4g2725 391 Gene3D - 118 175 - -
Lja4g2725 391 ProSiteProfiles Myb-like domain profile. 118 169 IPR001005 -
Lja4g2725 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 224 IPR017930 -
Lja4g2725 391 CDD SANT 177 220 IPR001005 -
Lja4g2725 391 PANTHER MYB PROTEIN-RELATED 65 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2725 Lja-Chr4 42157390 42158565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2725 112 390 MYB Transcription Factor Family AT5G58850 43.986 8.68e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2725 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2725 K09422 - aprc:113874412 347.821