Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2720 ATGTGTTTTTGGTTATTGTTTATGGAAGTATTTTACTATACCGATGGAAACCACTCAAGAGAAACAAATGAGAAAGTTGCCATCAAGAAGATACAGAATGCCTTTGAGAATCGTGTTGATGCGTTGAGAACTTTGCGTGAACTGCAGCTTCTTCGCCATCTTCATCATGATAATGTGATTGCTTTGAAAGACATCATGATGCCTGTTCATAGGAGTAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGACACGGATTTGCATCAGATCATTAAGTCTTCTCAATCACTGTCGAATGATCACTGTCAATATTTCCTCTTTCAGCTGCTTAGGGGCTTGAAATACCTCCACTCAGCTAACATCCTTCATCGTGACTTGAAACCTGGGAATCTTCTAATTAATGCAAATTGCGACCTTAAAATATGTGATTTTGGGTTAGCACGCATTAACTGCAGCAAGAACCAGTTCATGACTGAGTATGTTGTCACTCGATGGTATAGGGCGCCAGAGCTTCTACTCTGCTGCGACAACTATGGGACGTCTATTGATGTGTGGTCAGTGGGATGCATATTTGCAGAGCTTCTTGGGCGAAAACCTATTTTCCCTGGTTCAGAGTGTCTTAACCAGCTAAAATTGATTATCAATATCCTTGGTAGTCAAAGGGAAGAGGATATTGAATTTATTGATAATCCAAAGGCAAAGGAGTATATCAAGTCAATTTCATATTCTATTGGAGCCCCCTTCTCCCGACTTTACCCGAATGCGCATCCATTGGCAATTGATCTACTTGCAAAGATGCTTGTTTTTGATCCCACAAAGAGGATTAGTGTCGCCGAAGCACTTCAACACCATTACATGGCCCCTCTCTATGATCCTAATAGTGACCCTCCAGCCATGATTCCTGTTGATCTTGACGTCGATGAGGATCTAGGGGAAAAGATGATAAGGGAGATGATGTGGAAGGAAATGCTTCATTAA 981 0.4118 MCFWLLFMEVFYYTDGNHSRETNEKVAIKKIQNAFENRVDALRTLRELQLLRHLHHDNVIALKDIMMPVHRSSFKDVYLVYELMDTDLHQIIKSSQSLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARINCSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGSECLNQLKLIINILGSQREEDIEFIDNPKAKEYIKSISYSIGAPFSRLYPNAHPLAIDLLAKMLVFDPTKRISVAEALQHHYMAPLYDPNSDPPAMIPVDLDVDEDLGEKMIREMMWKEMLH* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2720 326 Pfam Protein kinase domain 19 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2720 326 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 326 - -
Lja4g2720 326 SMART serkin_6 13 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2720 326 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 326 - -
Lja4g2720 326 ProSitePatterns MAP kinase signature. 35 138 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lja4g2720 326 Gene3D Phosphorylase Kinase; domain 1 19 323 - -
Lja4g2720 326 ProSiteProfiles Protein kinase domain profile. 1 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2720 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lja4g2720 326 SUPERFAMILY Protein kinase-like (PK-like) 19 294 IPR011009 -
Lja4g2720 326 Gene3D Transferase(Phosphotransferase) domain 1 84 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2720 Lja-Chr4 41909151 41912659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2720 21 326 MAP Kinase Gene Family AT1G10210 84.967 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lja4g2720 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2720 K20535 - gmx:100798863 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2720 4 41909151 41912659 Lja4g2720 4 41909151 41912659 ECH