Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2698 ATGGGGCTGGGTGCCGAGAATGGCAAGGTGAAGGTGGTGGTGCAGTCTTTGAATACGTGTAAATCAAAGGGGAGGAGAATGAAGAAGGAGCAAGAAGAAGAGGAAGAGACTACTGGTTGCTGGCTTAGTCTGAGGTTCATCGGGAGCTGCATTTCTTCAAGATCCAAGGTTGACACCTCAGTTAGCGGCACAAGCACCAATTATGCTGAAAGTAAATTAACTAATGATACAAGTAGAGACCAGCCAACAGTTCCAGTATTATCTTCAACAACCACTAGTAATGCTGAAAGCAGTTCATCCACTTCTAAACTTGAAGAGGAGCTCAAAGTTGCATCCAGACTGCGGAAATTCTCCTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAAAGTCTTCTTGGTGAAGGTGGGTTTGGATGTGTGTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTCCGGTGAAACCTGGTACAGGGCTTACTGTTGCTGTGAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAGTGGCTGGCCGAAGTAAATTTTCTTGGTGACCTAGTTCATCCAAACCTTGTTAAACTTATAGGTTACTGCATTGAAGATGATCAAAGGCTTTTAGTATATGAATTTATGCCTCGGGGTAGCCTTGAAAACCACTTGTTTAGGAGATCCATGCCTCTTCCGTGGTCCATTAGGATGAAAATTGCCCTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGATGCTGAACGTCCTGTAATATATAGGGATTTCAAAACTTCCAATATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGACTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACTTATGGTTATGCAGCACCTGAATATGTCATGACAGGACATCTTACATCAAGAAGTGACGTGTATAGTTTTGGAGTGGTGCTTCTGGAGATGTTGACTGGCAGAAGATCCATGGACAAAAACCGACCCAATGGGGAACATAACCTTGTGGAATGGGCTAGACCACATCTAGGAGAGAGAAGAAGGTTCTACTGGTTGATAGATCCTCGATTAGAAGGTCACTTTTCCATAAAAGGAGCTCAGAAAGCTGCACATTTGGCTGCTCATTGCCTAAGCAGAGATCCGAAAGCCAGACCGCTTATGAGTGAAGTTGTAGAAGCCTTAAAGCCTCTGCCAAACCTTAAGGACATGGCTAGTTCATCCTATTATTTCCAGACAATGCAATCTGATCGCTTTAGTGCAAGCCCTAATAGTCGAAATGGGCGAACGCAAGGATCATTGCTCACCAGGAATGGACACAGGAGCCTTTCAATATCACATGGTACTCATGCTTCTCCTTATCACCATCAGTATCCCCAACAATCACCAAAACCCAATGGCAAAGCACAGAGTTGA 1458 0.4431 MGLGAENGKVKVVVQSLNTCKSKGRRMKKEQEEEEETTGCWLSLRFIGSCISSRSKVDTSVSGTSTNYAESKLTNDTSRDQPTVPVLSSTTTSNAESSSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEDAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYWLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQSDRFSASPNSRNGRTQGSLLTRNGHRSLSISHGTHASPYHHQYPQQSPKPNGKAQS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2698 485 MobiDBLite consensus disorder prediction 56 104 - -
Lja4g2698 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Lja4g2698 485 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Lja4g2698 485 Pfam Protein tyrosine and serine/threonine kinase 133 409 IPR001245 GO:0004672|GO:0006468
Lja4g2698 485 PANTHER OS01G0588500 PROTEIN-RELATED 61 473 - -
Lja4g2698 485 CDD STKc_IRAK 135 412 - -
Lja4g2698 485 MobiDBLite consensus disorder prediction 432 485 - -
Lja4g2698 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Lja4g2698 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Lja4g2698 485 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 61 473 - -
Lja4g2698 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2698 485 SUPERFAMILY Protein kinase-like (PK-like) 115 436 IPR011009 -
Lja4g2698 485 MobiDBLite consensus disorder prediction 56 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2698 Lja-Chr4 39462992 39483976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2698 115 409 Glycoside Hydrolase AT3G07070 58.725 5.64e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g2698 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2698 - - gmx:100807510 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2698 4 39462992 39483976 Lja4g2698 4 39462992 39483976 ECH