Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2695 ATGGCTGATCCTCAGAAAACTGGTGTTGGCGACAACAGGGATATCGAACAGGCAATTACATCTCTGAAGAAGGGCTCGTATCTGCTGAAGTATGGGAGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGACTTTCCAATGATGAGTCTCTGCTCTTATGGTACTCTGGCAAGGAAGAGAAGCAGCTTAGGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGGCCTGAGAAGGAGTATCAGTCATTTTCTCTTTTATATAATGATAGGTCCTTGGATTTGATTTGCAAGGACAAAGATGAAGCCGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTGCGCGAGGTACCTATAACAAGTGGAGATTCGAAGCAAGACCTGATAGTCTGTATTCTGAAAGTCCGAAGTCTGGCACGAGAAGATCCCCTCCATCAATTACACCATTTGACCCTGGAGATACCAACGGAGCTGCGTTTGAAATTTCTTCACAAAATAAGTGGGTAAAGGCTTTCTCTGAAATTATTTCATATACTTCAGCTAGCAAGAGTTCCAGTCAAGCTGAATCAGTTGCAAATTCATCTTTATCCTCTGGGTCTGTGGACAACTCGAGCAATCGAAATTCTGCTTCTGAGGCATTTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTATCATGAAGATTTTGATGCCTTAGGTGATGTTTTTATTTGGGGAGAAGATATAAGTTATGGAATTCTTGGTAGTGGCAGCATGCAAAGAGTTGGAAGCAGATCTAGTTCTGAGATGGATGCAATCCTCCCCAAGGCCTTGGAATCAAAAGTAGTTCTTGATGTTCATAGTATTGGTTGTGGCTACAAGCATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTATAGAAGTGGATGTTTTTCACCCTAAGCTTATTGACACACTTAGTGGCATGAATATTGAGTTAGTGGCATGTGGAGAATATCATACTTGTGCTGTTACATATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAATTCTGGTTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAAAGAGTAAGTGGTGATATTGAGGGTGTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGGCGGGCAGTTGTTTACTTTTGGTGATGGAACTTTTGGTGCCTTAGGTCATGGTGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAGACTTTGAAAGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGGGGTTATAGATGAGTGTGTGGAATCTTCTTCACAGTCGTCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGTTGATAGGGAACCAAGACTAGTTCCGGAGTGCGTAATTGCATTGGGTAATGAAAACATTTACCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACCTCAGGACATGTATATACAATGGGCAGTACAGCTTATGGACAACTTGGCTGTCCTCCCGCTGATGGGAAAGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTACTCACTTCTAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCACGGAGACAATGATCACAGGAATAAACCCACACTTGTCGAGTTTTTGAAAGATAAGCAAGTGAAGAGTGTTGTTTGTGGTTCAAACTTTACTGCTGTTGTGTGTCTTCATAAATGGATACCAAGTGTTGATCACTCTTGTTGTTCCGGTTGTCATAATCCATTTAATTTCAGAAGGAAACGTCATAATTGTTACAACTGTGGACTTGTGTTCTGCAAATTATGCACCAGCAGGAAATCTATGAAAGCTGCCCTCGCTCCGAATTCCAGCAAGCCATATCGGGTTTGTGATGACTGTTATAATAAGCTTAAGAAAGCTTCTGAATCATTACCCTGTGTACAAACTCCTAGCTTGAGATGCGTTGGTTTGCAAGACAGTAGGGCCACTAAAATACAGGGAACTCTACTGAGACTTCCTTCTTTTGGTTCTATTGTTCAAACAGAAAGCAGTCACTTGAAGCTTCCAGAATCACATTATAGCCATATTTTTACAGCTTTGAATGGAAAATTACAACTTGGGGGTTTGGTTCCTCCAAAATCATCAAATTCTCTTTCTGGAGAATGCAGGAAACACATTTCAGTTTCTGAGCCTGCTACAAGAATATCTTGTCAATCAACGTCTCCAGTTTCATCAAAGTCAAGCCCACGTCAATCTTATGAAGATATACATGATGATTTAAAGCACAGAAATGATATGCTAAATCAAGAAGTTTTAAGTTTAAGGGCACAGGTGGACAATCTTACTAGTAAGTCAAGAAGTCTCGAGGCTGAACTTGATAGAACATTAAAGCAATTGAAGGAAGTGACCGCAGTAGCTGCAGAGGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATTAAGTCATTAACTGCTCAGTTGAAGGAGATGGCGGAAAGACTGCCAAAAGGGCATGATACTGACTCCAGCACAAACTCCTATGCTGAAACCACTAACAGAATTGTAGATCAGTCCTTGGATGAGAGCTATATATCAAACACTATCACTCCTGTAAGTGAAGGAAGCAGCAATGAAGAAAAGCCAATATTGGCTAATGGTTCTAGAACACAAAGTGGAAAAGCAGAGTGGGTGGTGCAAGATGAACCAGGTGTATACATAAGTTTGTCCTCCATTCCCGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGCTGGCCCCTGATGTACCGTACGAAGCGTAGAGGATACCTCGGAAGTATCCTCCTCAAAAGAAGTAGGCGGTGTGGGCAGGAATCTGCCTCTCCCCAGGCTCATCAAAGAAGGTGGAAGGTCAAAGCTCACTGTCATCCGGCGTAG 3111 0.4301 MADPQKTGVGDNRDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLRLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLLYNDRSLDLICKDKDEAEIWFVGLKALVARGTYNKWRFEARPDSLYSESPKSGTRRSPPSITPFDPGDTNGAAFEISSQNKWVKAFSEIISYTSASKSSSQAESVANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDALGDVFIWGEDISYGILGSGSMQRVGSRSSSEMDAILPKALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGIEVDVFHPKLIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKRVSGDIEGVRVSYVSCGPWHTAIVTSGGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVVGVIDECVESSSQSSSGRLFTWGDGDKGQLGHVDREPRLVPECVIALGNENIYRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPPADGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVVCGSNFTAVVCLHKWIPSVDHSCCSGCHNPFNFRRKRHNCYNCGLVFCKLCTSRKSMKAALAPNSSKPYRVCDDCYNKLKKASESLPCVQTPSLRCVGLQDSRATKIQGTLLRLPSFGSIVQTESSHLKLPESHYSHIFTALNGKLQLGGLVPPKSSNSLSGECRKHISVSEPATRISCQSTSPVSSKSSPRQSYEDIHDDLKHRNDMLNQEVLSLRAQVDNLTSKSRSLEAELDRTLKQLKEVTAVAAEEAGKCKSAKEVIKSLTAQLKEMAERLPKGHDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSWPLMYRTKRRGYLGSILLKRSRRCGQESASPQAHQRRWKVKAHCHPA* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2695 1036 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Lja4g2695 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 295 305 IPR000408 -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Lja4g2695 1036 Pfam Transcription factor BRX N-terminal domain 873 902 IPR027988 -
Lja4g2695 1036 Coils Coil 878 898 - -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Lja4g2695 1036 MobiDBLite consensus disorder prediction 798 818 - -
Lja4g2695 1036 MobiDBLite consensus disorder prediction 933 953 - -
Lja4g2695 1036 SUPERFAMILY PH domain-like 14 122 - -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 480 529 IPR000408 -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 360 411 IPR000408 -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 416 464 IPR000408 -
Lja4g2695 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 532 581 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 256 272 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 311 327 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 361 377 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 402 418 IPR000408 -
Lja4g2695 1036 PRINTS Chromosome condensation regulator RCC1 signature 418 432 IPR000408 -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 416 467 IPR000408 -
Lja4g2695 1036 CDD PH_PLC_plant-like 13 123 - -
Lja4g2695 1036 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Lja4g2695 1036 Coils Coil 815 870 - -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 308 IPR000408 -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 415 IPR000408 -
Lja4g2695 1036 Gene3D - 476 642 IPR009091 -
Lja4g2695 1036 SUPERFAMILY RCC1/BLIP-II 245 638 IPR009091 -
Lja4g2695 1036 MobiDBLite consensus disorder prediction 139 164 - -
Lja4g2695 1036 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Lja4g2695 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 989 - -
Lja4g2695 1036 MobiDBLite consensus disorder prediction 798 815 - -
Lja4g2695 1036 SMART fyve_4 633 704 IPR000306 GO:0046872
Lja4g2695 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 710 IPR013083 -
Lja4g2695 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 989 - -
Lja4g2695 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Lja4g2695 1036 Pfam Transcription factor regulating root and shoot growth via Pin3 958 989 IPR013591 -
Lja4g2695 1036 Gene3D - 372 470 IPR009091 -
Lja4g2695 1036 Gene3D - 167 371 IPR009091 -
Lja4g2695 1036 Gene3D - 14 129 IPR011993 -
Lja4g2695 1036 SUPERFAMILY FYVE/PHD zinc finger 637 710 IPR011011 -
Lja4g2695 1036 ProSiteProfiles BRX domain profile. 959 1012 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2695 Lja-Chr4 39124251 39144368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2695 940 989 Major Intrinsic Protein MIP AT1G31880 48.000 3.11e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2695 - - pvu:PHAVU_003G066900g 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2695 4 39124251 39144368 Lja4g2695 4 39124251 39144368 ECH