Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2692 ATGATGCAGATTTCATCCACCAATTACTTGCCTGAACTTGGAATGGAGGAGCCAACTTACTTTCATCAATTCCCAATGGATTCATCATATGCAGAATTCCAAGATCTTGAGTTTGAGTCCTTCACCGCTTCCCCAGATGAGAGCTATTCCTCTGGCAATAAGCGCTTCAATTCTGAAAGTCCTGATTACTCTTTTGCCCCTGCAAGACCAACCAAGCAGCCCAAGACTGAGACTACTTGGAGTGCATATGGCACAGATTTGATAGCTTCCAAGGCTTCTTCTTCTTCTTCATCACCCAAAATCATTTCTTTTGAGCACTCCAATGTATCTTCAGTAACTTCTTCGCAACCTTTCCACAACATGGGTGCAGCAAACGTGGTGAAGCCTAAAATGGAATCCGGGTTTGGTGAAAACTTGGATTTTGCAGCTGTGATTTCTCAAGGTGCATATGATGACAAAAGTTTCCTATACAATGAAAACAAGCTGGCTGCCACAGCAACGATCAGAAACCAAGTTCAAGCTCGAGATCACGTACTAGCCGAAAGAAAACGAAGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCCGCTGTCCTTCCAGGACTCAAGAAGATGGACAAGGCCACGGTTTTGGAAGATGCAATTAGCTATCTGAAACAACTAAAAGAACAGGTGAAAACTCTAGAAGAACAAGTTGCCGATAAAACTGTTGAAACAGCAATCTTTCTGAAGAGATCTGTTGTCTTTGGTGATGATGATGGCTCCTTCTCTGATGAAAACTCCGATCAATCACTCCCTGAAATCGAAGCGAGAGTTTCTGGGAAAGACATACTCATCAGAATCCACTGCGAGAAACACCATGGGAAAGCAGTGTCTGCAATACTTGTGGAATTAGAAAAGCACCATCTCACAGTTCAAAGTACCAGCATTTTGCCCTTTGGAAATAACACTCTTGACATAACCATTGTTACTCAGGTAAATATATTAATTAACTTAGTGATATTTCCTTGTTATAGAACAATTATCTATTCCATCAAGATAGGAATCATTGGAAAATTTAAGTAA 1065 0.4113 MMQISSTNYLPELGMEEPTYFHQFPMDSSYAEFQDLEFESFTASPDESYSSGNKRFNSESPDYSFAPARPTKQPKTETTWSAYGTDLIASKASSSSSSPKIISFEHSNVSSVTSSQPFHNMGAANVVKPKMESGFGENLDFAAVISQGAYDDKSFLYNENKLAATATIRNQVQARDHVLAERKRREKLSQRFIALSAVLPGLKKMDKATVLEDAISYLKQLKEQVKTLEEQVADKTVETAIFLKRSVVFGDDDGSFSDENSDQSLPEIEARVSGKDILIRIHCEKHHGKAVSAILVELEKHHLTVQSTSILPFGNNTLDITIVTQVNILINLVIFPCYRTIIYSIKIGIIGKFK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2692 354 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 327 - -
Lja4g2692 354 CDD bHLH_AtNAI1_like 174 246 - -
Lja4g2692 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Lja4g2692 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 239 IPR036638 GO:0046983
Lja4g2692 354 MobiDBLite consensus disorder prediction 43 78 - -
Lja4g2692 354 Gene3D - 169 234 IPR036638 GO:0046983
Lja4g2692 354 Coils Coil 211 238 - -
Lja4g2692 354 SMART finulus 178 227 IPR011598 GO:0046983
Lja4g2692 354 Pfam Helix-loop-helix DNA-binding domain 177 222 IPR011598 GO:0046983
Lja4g2692 354 MobiDBLite consensus disorder prediction 43 60 - -
Lja4g2692 354 PANTHER BHLH TRANSCRIPTION FACTOR 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2692 Lja-Chr4 38024395 38027501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2692 127 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 46.903 1.75e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2692 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2692 - - gmx:100798011 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0209 2 1848168 1850438 Lja4g2692 4 38024395 38027501 PCT