Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2690 ATGTTGCATTTGCAGTTGCAGCTACACTCACCACCACCACTACTCTTATCATCTTCTTCTTCCCTTAAGCTTCCCCCAAACCCACACTCTTTATCCCTAAAACGTTTTCCTTCTAAACCCCTCACTCTCATCAGATGCCGCCACTCAGACCTGTTCGACCAAAAAACCTTCTCCTCCTCCACTCCACAACCTGCAAACCCCGCTGCTGTTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCTCTCACAGTCACTCCTAGACCTCCAGAATTCGCACCACTCGATTCAGGGGCATTCAAAATATCTAGGGAGGGTTATGTGTTGCTTCAGTTTGCGCCTGCCATTGCTTCGCGCCAATATGATTGGAATCGAAAGCAGGTGTTCTCGTTATCTGTTGTTGAAATGGGAAGTGTGATTAGTCTAGGTACAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGAAAAAGTGATGAAGGTAAAGTCAGGAAAGTCTTGAAGTTGGAACCTCTTCCAGATGGTTCTGGTCACTTCTTTAACCTCAGTGTTCAAAACAAGATTGTGAACATTGATGAAAACATCTATATCCCTGTTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAATTTTCAATTTTATCATGCCATACCTTCTAGGGTGGCATACCTTTGCAAACTCCGTAAACCCGGAGTATTCCAGTGGAGTGAATAATGCCAACCCAAGGTATGGAGGAGACTATGAATGGAACAGATAG 786 0.4427 MLHLQLQLHSPPPLLLSSSSSLKLPPNPHSLSLKRFPSKPLTLIRCRHSDLFDQKTFSSSTPQPANPAAVSVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWNRKQVFSLSVVEMGSVISLGTRESCEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKIVNIDENIYIPVTKAELAVLSSIFNFIMPYLLGWHTFANSVNPEYSSGVNNANPRYGGDYEWNR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2690 261 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 261 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lja4g2690 261 SUPERFAMILY ssDNA-binding transcriptional regulator domain 77 261 IPR009044 GO:0003677|GO:0006355
Lja4g2690 261 Gene3D Transcriptional Coactivator Pc4; Chain A 70 243 IPR009044 GO:0003677|GO:0006355
Lja4g2690 261 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 43 261 - -
Lja4g2690 261 Pfam Whirly transcription factor 85 219 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2690 Lja-Chr4 37672193 37680022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2690 13 261 Whirly Transcription Factor Family AT1G14410 64.314 3.27e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lja4g2690 Whirly 3e-61 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2690 - - gmx:100789252 378.637