Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2687 ATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTTGAGAACACCAATGGCCGCCAGGCAACATATGCTAAAAGGAAAAATGGAATCATAAAAAAAGCATCTGAGTTATCTATACTATGTGATATAGATATTATACTTCTCATGTTCTCACCAAGTGGAAAGCCTTCGATATGCAGGGGGAGGCACAGCAACTTAGAGGAAGTTATTGCAAAGTTCGCTCAACTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGCCTCGAAGCACTGAAGAAAACCTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTATGGGTACAAGTAGTCAAAGAATTGAGGATGTAAGTAATCATGCCAGGTTATTACAGAATCAAATTTCTGAAATCCAAAAGAGATTAAGTAATTGGACTGAGATTGATAAAATAAGCAGTGTATATCAGTTGGGACAGATGGAAAATTCAGTCCGGGAGTCACTTAAGCAAATTCAAACCCATAAGGAAAATATAAAAAAGCAACAACAACTGGTGACCCTACAATGCAATAGCCAGTTCAATGAAATGAGTAATCCCTTCAGAATGAGTGTAGACCAGCATCTCCAACCTCTCTCGTGGATTGCTAATGGAGACAGCCAAAATATAGTTTTACCCGAGGACTCAAACTTGTTTCTCTACAAAGATGTAGAGGGATCTGCAAGTTCATCATTTGGGAGTTATGCGAGTTATCTCGGCTCAAGTAGCAAACTTGAGATTTCTACCTCCGGGCAAGAAAATTGTGTCCTCATTGACATGAGTAGTACTGCTCCTCTTAGACTACAATTGAGTGGGCAGATTCCGTACCTGCCTTACAATTTCAATTTATTGAATAATTTGAAGTTGCAACCAACTGCAGCAGAGATCAACCCGCATAAAAACCCTGTAGATTATCATGTGGATGGAAGCTTTGAAGACCCTAGACCTGGTTATGATTCTAACCAGCATGGATGGGCTTCTACATCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTACGCCCAGGCAAGTTTCAATAAAGTGCATTTTGGCTTCACGTAG 1083 0.3998 MGRVKLKIKRLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPSGKPSICRGRHSNLEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFMGTSSQRIEDVSNHARLLQNQISEIQKRLSNWTEIDKISSVYQLGQMENSVRESLKQIQTHKENIKKQQQLVTLQCNSQFNEMSNPFRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGSYASYLGSSSKLEISTSGQENCVLIDMSSTAPLRLQLSGQIPYLPYNFNLLNNLKLQPTAAEINPHKNPVDYHVDGSFEDPRPGYDSNQHGWASTSGPCAVTMFDEHLYAQASFNKVHFGFT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2687 360 CDD MADS 2 54 - -
Lja4g2687 360 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 350 - -
Lja4g2687 360 Coils Coil 77 97 - -
Lja4g2687 360 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 Coils Coil 150 177 - -
Lja4g2687 360 Coils Coil 114 141 - -
Lja4g2687 360 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lja4g2687 360 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 350 - -
Lja4g2687 360 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lja4g2687 360 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2687 Lja-Chr4 37642126 37646980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2687 1 349 Type I MADS-box Gene Family AT2G03060 49.604 5.17e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja4g2687 SRF-TF 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2687 - - gmx:100811701 543.888