Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2686 ATGAAGGCATGGCTACCGGGTAGTGTTATATACTCTTCACAAGATAACTCCAACGATGCTTCCTCTTCCTATCATTCTCCTCATTCAATGGGAATAGTCTATGCAGACATGGACTCACTCTCTCTTTGCCACAACTATGGTACTGTTTCTTCAGCTCGAGATTGCTATGTCTCTAAAGAGGGTACATCTACAAGCTGGTCTTTGTCCTTCATGAGAGAATGCCTTCCTTCAAACTCTGAGGAAAACCCCAACAGTGATGTTTTGATCGGTAAAGGGTCTGATTGCAGTGATGAAGCAGGGCAAAACCATGAGAATCCTAATTTAATTGAAGAAGAGAACCCGGATGAGAATTGTATGAGTGGCAAGGAGAAAGGCAGTACTGGACATTCCAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTCGTTGCTCTTTATGGCCCTCAGAACTGGAACTTGATAGCTGAAAAGTTAGAAGGCAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGGATCAACAGGAGAGCTTTCAGTGAAGAGGAAGAAGAAAGGCTAATGCAGGCACACAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACTGACAACGCAGTGAAGAATCACTGGCATGTTATAATGGGAAGAAAGTATAGGGAACAGTCCAATGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACTCAAGAATGGATGATCAAGATACAACAAGCTTTGTGATCTCTAGAGAACCAGTTCCAGCACCACCACCGCTCTATTGTCTCAATCTCCACAACAGCATCGTTAGTAATTTCCCATATGCTGCTGCATCATCCTTCCATGGAGTTGATCAGTGCAGCTTAAATGGTTTAAGTAGCAACATGCCCCCTCCTCATTTTGGCCTGTATGCTCCGCAGAAACATCTTGATTTCTTCTCTGGTGGTGCAAGAAGCAATAACCAAATCAGATGGTGGGACGGGCCAAGTGATTTTATTTCTTCACAACCTCATTCCCCCCAGCAATGTCTGATGCTAATGCAACAGCAAAACAATCACAATAATTTTTACAGTTTCTCAAATTCCACAGCAGCAGCAGCACCAACAGCAGGAGCTCAGATATTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACACAAAGATCAAGCTCTGACCAGTGACCCCCCAGATGCAATTCCATCTCCTCCATTTATTGACTTCCTTGGGGTAGGATCCACATGA 1296 0.4514 MKAWLPGSVIYSSQDNSNDASSSYHSPHSMGIVYADMDSLSLCHNYGTVSSARDCYVSKEGTSTSWSLSFMRECLPSNSEENPNSDVLIGKGSDCSDEAGQNHENPNLIEEENPDENCMSGKEKGSTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMGRKYREQSNAYRRRRLSQSVYSRMDDQDTTSFVISREPVPAPPPLYCLNLHNSIVSNFPYAAASSFHGVDQCSLNGLSSNMPPPHFGLYAPQKHLDFFSGGARSNNQIRWWDGPSDFISSQPHSPQQCLMLMQQQNNHNNFYSFSNSTAAAAPTAGAQILGSEASLSSVAEHKDQALTSDPPDAIPSPPFIDFLGVGST* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2686 431 MobiDBLite consensus disorder prediction 76 124 - -
Lja4g2686 431 CDD SANT 138 179 IPR001005 -
Lja4g2686 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 236 IPR017930 -
Lja4g2686 431 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Lja4g2686 431 CDD SANT 189 229 IPR001005 -
Lja4g2686 431 Pfam Myb-like DNA-binding domain 187 230 IPR001005 -
Lja4g2686 431 Pfam Myb-like DNA-binding domain 135 181 IPR001005 -
Lja4g2686 431 PANTHER MYB TRANSCRIPTION FACTOR 30 431 - -
Lja4g2686 431 SMART sant 134 183 IPR001005 -
Lja4g2686 431 SMART sant 186 234 IPR001005 -
Lja4g2686 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 181 IPR017930 -
Lja4g2686 431 Gene3D - 135 186 - -
Lja4g2686 431 Gene3D - 188 259 - -
Lja4g2686 431 MobiDBLite consensus disorder prediction 104 119 - -
Lja4g2686 431 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Lja4g2686 431 SUPERFAMILY Homeodomain-like 135 228 IPR009057 -
Lja4g2686 431 PANTHER MYB PROTEIN-RELATED 30 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2686 Lja-Chr4 37472966 37474587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2686 105 252 MYB Transcription Factor Family AT1G69560 74.667 5.77e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2686 Myb_DNA-binding 1.9e-14 CL0123