Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2685 ATGGAGGACAATCACACCCCAATGGACGCATCAGTAGCTAGCTGGCTATCTGATTTCGAAATTGATGATCACACTCTATTTCCTGATGAGTGCCACCACCTGAACTTGCTTGTTGTTGATGACAAAGAGTTTCTATCAAATGATGACATAGCAAGTGTCCTGCAAAAACAGACACTTCAACAATCACTATCTTCAGATTGCACTTCTATAACTCTGAGTAACTCGTTCACTGATGAAACTAGCTTTGACTTTGCTGATACACCTTCCATCACTGAAAACTTTTCACCAGAACTTTCCCCTTCATCCTCCATCTCCTCTTTCAAGTCTCAGATTCTGTTTTTGGACAACACAAACTCATCCCCTGCCACCAACACCACCACACAGATTTCTGGGTTTGACTCCAGCACCTTGAACCCAAAACAGAATGAAACTGTGTTAGTGCCACTGCCCCAGTTGGGAAACACGCATATCTCAACTCAAAATTCAAAAGGGTCATCGAAAAATCAAAACTTTGAAACGAAATCCTCACATGGAAAGAGGTCTCCAGCTCACCATCATGATCACATCATGGCAGAGAGAAAGCGCAGGGAGAAGCTCAGCCAGAGCTTCATTGCTCTCGCAGCACTTGTTCCTGGCCTTAAGAAGATGGACAAGTCCTCTGTATTAACAGACGCAATCAAATATGTGAAAGAGCTAAAGGAGCGTTTGGCGGTGCTGGAAGAACAGAGCAAGAAAACAAAGGTTGAGTCGGTAGTGGTTCCAATCAACAAGCCTGCGCCAGAGTTGTGTGGCGGCGATAATGATGATGAATCACTGGTGCAAGTGGAATCAAGAGTGTCAGAACAGGATATGCTGATTCGGATCCTCTGCAAGAAACAAAAGAGGCTGCTGACAAAAATTCTCGCTGAGATTCAAAGTTTTCAACTGTCCGTTGTCAATAGCAGTATCTTACCTTTTGGGGATTCTATGGACATTACTATTATTGCTCAGATGGGTGAGGGTTACGACTTGACTGCAAAGGAACTTGTCAAGAAACTACGGGTAGCAATATTGAAGTTTATGTCATGA 1068 0.4354 MEDNHTPMDASVASWLSDFEIDDHTLFPDECHHLNLLVVDDKEFLSNDDIASVLQKQTLQQSLSSDCTSITLSNSFTDETSFDFADTPSITENFSPELSPSSSISSFKSQILFLDNTNSSPATNTTTQISGFDSSTLNPKQNETVLVPLPQLGNTHISTQNSKGSSKNQNFETKSSHGKRSPAHHHDHIMAERKRREKLSQSFIALAALVPGLKKMDKSSVLTDAIKYVKELKERLAVLEEQSKKTKVESVVVPINKPAPELCGGDNDDESLVQVESRVSEQDMLIRILCKKQKRLLTKILAEIQSFQLSVVNSSILPFGDSMDITIIAQMGEGYDLTAKELVKKLRVAILKFMS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2685 355 MobiDBLite consensus disorder prediction 153 172 - -
Lja4g2685 355 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 355 - -
Lja4g2685 355 Pfam Helix-loop-helix DNA-binding domain 188 232 IPR011598 GO:0046983
Lja4g2685 355 MobiDBLite consensus disorder prediction 153 193 - -
Lja4g2685 355 PANTHER BHLH TRANSCRIPTION FACTOR 5 355 - -
Lja4g2685 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 250 IPR036638 GO:0046983
Lja4g2685 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Lja4g2685 355 Coils Coil 222 249 - -
Lja4g2685 355 Gene3D - 171 249 IPR036638 GO:0046983
Lja4g2685 355 SMART finulus 189 238 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2685 Lja-Chr4 37294727 37297446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2685 161 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.813 4.15e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2685 HLH 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2685 - - gmx:100788128 400.208