Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2681 ATGGCTGGTTTGGATTTAGGAAGCGCTTCAAGGTTTGTTCAGAGCCTCCACAGACCCGACTTGCACCTCTCAGAAGACCACCAAGACCACCGCAGTGGGGCCCTATTCTCCAGCGAGGACGATGACCGGAGCCAAGGCTTGGAGCTAGGTTCGGCGGGACCCGGCGACGTGGTGGGCCGGCGTCCACGTGGCAGGCCGCCAGGGTCCAAGAACAAGCCGAAGCCGCCGGTGATCATCACGAGGGAGAGCGCCAACACGCTCCGGGCCCACATCCTGGAGGTAGCCAGCGGCTCCGACGTCTTCGACTGCGTCACCGCCTACGCGCGCCGCCGCCAGCGCGGGATCTGCGTCCTGAGTGGAAGTGGAACCGTCACGAATGTTAGCCTCCGGCAGCCGGCTTCCGCCGGCGCCGTCGTGACTCTGCACGGGAGGTTCGAGATACTGTCACTCTCCGGATCGTTCCTTCCGCCGCCTGCCCCTCCCGGGGCGACGAGTTTGACTATCTACCTCGCCGGAGGGCAGGGGCAGGTCGTTGGAGGGAGCGTAGTGGGAGAGCTGACCGCGGCCGGACCCGTCATCGTGATTGCGGCGTCGTTCACGAACGTGGCCTACGAGAGGCTGCCGTTGGACGAGGAGGAGGAGGAGCAGCAACAGCAGCATCAGCTTCAGATGCAGACTCCGCCGGCTGGGTCTCAGGGTTCCGGCGGCGGTGTCAACCCTTTTCCGGACCCTTCTTCCGGTTTGCCTTTCTTCAACTTGCCGTTGAATATGCAGGGTGTTCAGTTACCGGTGGATGGTTGGGGCGGAAACGTTAACTCAGCTCCTCGTCCACCCTTTTGA 840 0.6345 MAGLDLGSASRFVQSLHRPDLHLSEDHQDHRSGALFSSEDDDRSQGLELGSAGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDCVTAYARRRQRGICVLSGSGTVTNVSLRQPASAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEEEQQQQHQLQMQTPPAGSQGSGGGVNPFPDPSSGLPFFNLPLNMQGVQLPVDGWGGNVNSAPRPPF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2681 279 MobiDBLite consensus disorder prediction 20 78 - -
Lja4g2681 279 MobiDBLite consensus disorder prediction 20 46 - -
Lja4g2681 279 Gene3D - 87 224 - -
Lja4g2681 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 279 IPR014476 GO:0003680
Lja4g2681 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 213 - -
Lja4g2681 279 PIRSF ESCAROLA 6 279 IPR014476 GO:0003680
Lja4g2681 279 MobiDBLite consensus disorder prediction 210 247 - -
Lja4g2681 279 MobiDBLite consensus disorder prediction 219 233 - -
Lja4g2681 279 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Lja4g2681 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 201 IPR005175 -
Lja4g2681 279 CDD DUF296 88 171 IPR005175 -
Lja4g2681 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2681 Lja-Chr4 36999705 37001219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2681 1 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.550 2.01e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2681 - - pvu:PHAVU_003G230600g 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2681 4 36999705 37001219 Lja4g2681 4 36999705 37001219 ECH
Lja2g0199 2 1713773 1716266 Lja4g2681 4 36999705 37001219 PCT