Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2676 ATGGATTCCCGACCACCGCCACCGCCGCCGAACATGATGACCGCACCAAACTCCTACCCTCCGCCACCACCGACCAACAATTCCTCCCCCATGATCAGCCCTAATTCCAACATCCTGGCCCCTGCAACCGCCCGATTCCCCTTCGGCTCCCCTTCCCCTGCTCCGCCGCAGGCTCCTCCTCCTCCTCCTCCTCCGTCGGAGACTTTCTCGGCCTCCTTCGAAGGTGCCTCTTCCTCCCCCGCGGGTCTTGCCAAGAAGAAGAGGGGTCGGCCGAGGAAATACTCCCCTGATGGCAACATTGCCCTGGGTCTGGCCCCAACTCAGGCGGCCCCGGCCCCCTCCGCCGGCGATTCGGGCTCCGCTGATGCTCCGCCGAAGAAACACAGGGGAAGGCCTCCGGGCTCCGGGAAGAAGCAATTGGATGCGCTTGGAGCTGGTGGGCTTGGTTTCACTCCTCACGTAATCATTGTGGAAACTGGGGAGGACATCATAGAAAAACTTGTGGCCTTCTCTCAGCAAGGACCTCGGACAGTTTGTATTCTTTCTGCTTCTGGTGCAATCCGCGATGTCATCCTTCGGATTCCACAATCTGCTGCCACTCATACATACGAGGGCCCATATGCGATTATATCTTTAACAGGTGCTTTGGAGCCATCTGAAAGCTATGGTGGGCGTACCAGACCAAGGAATTTGCGTATTTCCATGGCAGGGGCTGATGGACGGGTTTCGGGTGGCGAAGTTGCTGGAACGCTAACTGCAGCTGAACCTGTACAGATCATTGTGGGTAGCTTCATTGTGGATGGGAAAAAATCGAGCTCGAATGTGGTGAGATCTGGACCTTCACCTTCCTCAGCACCAACCTCCCAAATGTTGGCCTTTGGTGCACCAGTAACTCCAACTAGCCCTCCTACCTCTCAAGGGCCTTCAACCGAGTCCTCGGAGGACAATGATCAAAGTTCTTTCAATCGGGGGCCAGGACTCTACAACAATGCTACTCAGCCTGTTCATAGTATGCAAATGTACCATCATCCACTATGGGCTGGCCAAACGCATCACTGA 1059 0.56 MDSRPPPPPPNMMTAPNSYPPPPPTNNSSPMISPNSNILAPATARFPFGSPSPAPPQAPPPPPPPSETFSASFEGASSSPAGLAKKKRGRPRKYSPDGNIALGLAPTQAAPAPSAGDSGSADAPPKKHRGRPPGSGKKQLDALGAGGLGFTPHVIIVETGEDIIEKLVAFSQQGPRTVCILSASGAIRDVILRIPQSAATHTYEGPYAIISLTGALEPSESYGGRTRPRNLRISMAGADGRVSGGEVAGTLTAAEPVQIIVGSFIVDGKKSSSNVVRSGPSPSSAPTSQMLAFGAPVTPTSPPTSQGPSTESSEDNDQSSFNRGPGLYNNATQPVHSMQMYHHPLWAGQTHH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2676 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 264 IPR005175 -
Lja4g2676 352 Gene3D - 152 275 - -
Lja4g2676 352 MobiDBLite consensus disorder prediction 1 143 - -
Lja4g2676 352 CDD DUF296 151 264 IPR005175 -
Lja4g2676 352 MobiDBLite consensus disorder prediction 270 332 - -
Lja4g2676 352 ProSiteProfiles PPC domain profile profile. 146 285 IPR005175 -
Lja4g2676 352 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Lja4g2676 352 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Lja4g2676 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 320 IPR039605 GO:0003680
Lja4g2676 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 57 320 - -
Lja4g2676 352 MobiDBLite consensus disorder prediction 48 68 - -
Lja4g2676 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 265 - -
Lja4g2676 352 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2676 Lja-Chr4 36726700 36730563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2676 7 350 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 40.146 8.46e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2676 - - var:108323770 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2676 4 36726700 36730563 Lja4g2676 4 36726700 36730563 ECH
Lja2g0196 2 1691728 1695484 Lja4g2676 4 36726700 36730563 PCT