Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2670 ATGGGTTGTACGATGAGGGATAAACATATCAGGGCAAATCGAAGACCTCGTTCGGTGAAACCTGATCCGGATTCATGCGACAAGGATGCCATATCGAAATCCATAGCGGAATCTGGTCTCAAACCCTTGAAGTACAATCTGGGTCTTTACGATTCTTCATCTCAGAACCCTAATCCTAGCCCCAATTCGAACCCTAGTATTGACGAAGCTGGATTGGGTCGCTTCATCCCCACCGAGGAGCAGCTGGAAGATGTCCTGTTGAAAAACCTGGAGGTTGTGTACAATGAAGCTGTGTCAAAGCTTGTTGCTTTGGGATACGATGAGGATGTTGCTGTTAACGCCATTTTGCGAAATGGGCATTGCTATGGTGGCATGGATGTGCTCACAAACATTTTGCACAACTCCTTAGCGTATTTGAATAGCAGCAATGGTGGTGGTGGTGGTGGGAATAGTGATGGGAATTCGGATGAGTCGGAGCCGGTTTTTTCTGACTTGAGGCAGTTGGAGGAGTACTCTCTGGCGGGTATGGTGTGTTTGTTGCAACAGGTGAAGCCTAATATGAGTAAAGCTGATGCCATGTGGTGTTTGCTCACGAGTGATCTTCATGTGGGAAGGGCCAGCACGGTGGAGGTTCCGGCGGGCACTGTTAGCCCTGCTCCTGCTGCGGTCGAGGCGGGTGGAAATTCGGTTGGTGTTACGGCTCCAGCTCTGTGCAGGTTTCATGGGGGTTGGGGGTTTGGAAGTGGGGGAGGCTTGGATGCTCCGGCGAGTGGGACATTCTCTTGTGGTGCAGCAGAGATGAACTTGCAGTTGCAAAGAGATATTGAATTTCCAAAGAGGTTTAACCTTTCTCCTTCGATGAAGTCCTTATTGAAGAAGAATGTCGCTATGTTCGCTGCTGGTTTTAGGGCCAACTCTAAACATTTGCAGACACAGGCCAAGGCCTTTCCTGGCCGTGATACAGTGTCTAATGTGGATTCTTCAGCTGTTTCCGGGACGGAAGTCCCGGTTGATCAGTCCGGAGATTCTCAGAATCTCGTTAACCAAGATGTTGTGAACTCGGTGCTGAGTAAATTTCGTGATTTAAATCTTGATGAGAATATGGAGCTTGTGGCAGATGATCAGAAAGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAACAGGTCAAGGAGGTAAAAGAGTGGGCTCATAAGAAGGCAATGCAAGCAGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGCTGCGGATGGAAAGAGAAGAGACTCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAGACTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTAGACCGTGCAAATGCTGCTGTAAGAAGACTAGAGACAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCGGTGTCAGCGTGCTTAGAAGTTGCAAAAAGGGAGAAGAAATGCTTAAAGAAACTTCTTGCTTGGGAAAAACAGAAAGCGAAGCTACAGCAGGAGATTTCCGATGAAAAAGAGAAGATATCGCAGGCAGAAGAAGTATTGGCTCAGATTAGACAGTGTCAAAAAGAAGCTGAGGTTAAATTGACGGAGGAGTTGAAGGCTAAAGATGAAGCATTCACACTAGTTGAGGAGGAACGCCGCGCTAAGGAAGCAGCAGAGTCTAATAACAAGAGGAAGCTTGAGGCTTTGCGCCTGAAGATAGAGATAGATTTCCAGCGCCATAAGGATGATCTTCAAAGACTTGAACAGGAGCTTTCGCGCCTTAAAGCATCTGCTCAAACTGCTGAGTTACATCACCAGTCACCTATGAGTGGCTCTGAGGGTACAAAGCCCCAAAGAGACACAATTGCGAAGCTGCTTCAAGAACTAGACAACCTGGAGGATATGTCAGAGAAAGAAGTGAGCAGCAACAGGGAATGCATTATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCCTGTGCACATCAGGTCATGTGTGCGAGTTGCAGTGATGAGTATGGAAGGAAAGGTAAGGCTGCTTGTCCTTGCTGCCGTGTTCAAATCCAACAGAGGATCCGCGTATTTGGGGCAAGTTCATGA 2157 0.4678 MGCTMRDKHIRANRRPRSVKPDPDSCDKDAISKSIAESGLKPLKYNLGLYDSSSQNPNPSPNSNPSIDEAGLGRFIPTEEQLEDVLLKNLEVVYNEAVSKLVALGYDEDVAVNAILRNGHCYGGMDVLTNILHNSLAYLNSSNGGGGGGNSDGNSDESEPVFSDLRQLEEYSLAGMVCLLQQVKPNMSKADAMWCLLTSDLHVGRASTVEVPAGTVSPAPAAVEAGGNSVGVTAPALCRFHGGWGFGSGGGLDAPASGTFSCGAAEMNLQLQRDIEFPKRFNLSPSMKSLLKKNVAMFAAGFRANSKHLQTQAKAFPGRDTVSNVDSSAVSGTEVPVDQSGDSQNLVNQDVVNSVLSKFRDLNLDENMELVADDQKDEVIVTLFHQIKDLEKQVKEVKEWAHKKAMQAARKLSNDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVSACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKEKISQAEEVLAQIRQCQKEAEVKLTEELKAKDEAFTLVEEERRAKEAAESNNKRKLEALRLKIEIDFQRHKDDLQRLEQELSRLKASAQTAELHHQSPMSGSEGTKPQRDTIAKLLQELDNLEDMSEKEVSSNRECIICMKDEVSVVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2670 718 Coils Coil 640 660 - -
Lja4g2670 718 Pfam Family of unknown function (DUF6592) 89 206 IPR046527 -
Lja4g2670 718 MobiDBLite consensus disorder prediction 613 635 - -
Lja4g2670 718 SMART ring_2 664 703 IPR001841 -
Lja4g2670 718 Coils Coil 503 544 - -
Lja4g2670 718 MobiDBLite consensus disorder prediction 48 67 - -
Lja4g2670 718 MobiDBLite consensus disorder prediction 16 31 - -
Lja4g2670 718 Coils Coil 447 488 - -
Lja4g2670 718 Coils Coil 566 586 - -
Lja4g2670 718 Pfam Zinc finger, C3HC4 type (RING finger) 661 709 - -
Lja4g2670 718 ProSiteProfiles Zinc finger RING-type profile. 664 704 IPR001841 -
Lja4g2670 718 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 717 - -
Lja4g2670 718 Coils Coil 588 622 - -
Lja4g2670 718 MobiDBLite consensus disorder prediction 1 31 - -
Lja4g2670 718 MobiDBLite consensus disorder prediction 613 636 - -
Lja4g2670 718 MobiDBLite consensus disorder prediction 48 71 - -
Lja4g2670 718 PANTHER OS05G0141500 PROTEIN 1 717 IPR046934 -
Lja4g2670 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 715 IPR013083 -
Lja4g2670 718 SUPERFAMILY RING/U-box 644 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2670 Lja-Chr4 36504023 36510296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2670 664 714 C3H Transcription Factor Family AT1G73950 43.137 8.51e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2670 - - gmx:100797917 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2670 4 36504023 36510296 Lja4g2670 4 36504023 36510296 ECH