Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2668 ATGGAAGGGGCACCACTGCCACCAGGTTTTCGTTTCCATCCTACTGATGAAGAACTAGTTGGATACTACCTTAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTTGATCCATGGGAGTTGCCCGAGAAATCGTTTCTTCCAAGACGAGATTTGGAGTGGTTTTTCTTCTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACAAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAAGTGATAAGCCAGTGTGATGATGCATCCACTGTCACAGGGTACCGCAAGACACTGGTTTTCTATCTTGGAAGGGCTCCTCTTGGGGATAGAACTCACTGGGTCATGCATGAGTATCGCCTCTGTGATGATGATCCTGGACAAGCCTCACCATGTTTTAAGGGTGGTTTTGCTTTGTGCCGAGTTACTAAGAAGAATGAGAAGACAAGTTACTCACATGGAGAACAAAAGGGGAAGGAGGGTGCAAGCAGTTCCATCAATGGGAGTGACACCTCTTTAAGATTCTCTGGTGACGGTTCCTCTCAAGCAAGCCACCTGAATAATGAGAGTCATTATTCAAGCCCTGTTACTTCTCCATACAATGTGGCTCCAGTGCCAGATACCAACCAAGCTTTCACAGAAACCAACCCTTCAAACTTCTGGATCTCTTCTAACATGATTCTTGATTCTTCAAAGGACTATGCTCAAGTACAAGATGTTGTGTCTGAATATTCTCCTAGGTATGGCTTACCAAGTGCAGTGACACCAAGGCAATCATCAGAACAAGAACAAACAGAAATTTCATCTAGTTTATCTAACTCAAATTTTAATGCAGAAATTGAATTTTCTGATAATCTCAGTCAAATTGGGTGCATGTCACCTTGCACAAGCCATGGGAATTTCATGGACTTTTATGGAAATTTTGATGCTCCCTATGAAGGTTATCATCAAATTAATTCAGTCCCACATCCAGATCCCTTTTAA 1032 0.4215 MEGAPLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPRRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVISQCDDASTVTGYRKTLVFYLGRAPLGDRTHWVMHEYRLCDDDPGQASPCFKGGFALCRVTKKNEKTSYSHGEQKGKEGASSSINGSDTSLRFSGDGSSQASHLNNESHYSSPVTSPYNVAPVPDTNQAFTETNPSNFWISSNMILDSSKDYAQVQDVVSEYSPRYGLPSAVTPRQSSEQEQTEISSSLSNSNFNAEIEFSDNLSQIGCMSPCTSHGNFMDFYGNFDAPYEGYHQINSVPHPDPF* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2668 343 MobiDBLite consensus disorder prediction 264 288 - -
Lja4g2668 343 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Lja4g2668 343 SUPERFAMILY NAC domain 4 161 IPR036093 GO:0003677|GO:0006355
Lja4g2668 343 MobiDBLite consensus disorder prediction 268 288 - -
Lja4g2668 343 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 343 - -
Lja4g2668 343 MobiDBLite consensus disorder prediction 172 225 - -
Lja4g2668 343 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Lja4g2668 343 MobiDBLite consensus disorder prediction 164 225 - -
Lja4g2668 343 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 343 - -
Lja4g2668 343 ProSiteProfiles NAC domain profile. 6 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2668 Lja-Chr4 36489436 36492263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2668 1 267 NAC Transcription Factor Family AT4G17980 59.259 6.02e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g2668 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2668 - - gmx:100792714 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2668 4 36489436 36492263 Lja4g2668 4 36489436 36492263 ECH