Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2656 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAGGACTTTCCCAAGGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGTGCTTCTGCTGCTGAGTTAAAAGATAAACTTGAGGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGACCAGAAGGCTTCCACATTGCCATTGTGGAGGTGAGTTTAAGCAGTTGCCAGGGAGGTTTCAAATTCCTTCAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAACCATTGCCTGGACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCCGAGGACAAGCTCAAAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGTCCTTTCTGAATCACTAAAACCTGTCAAAGAATCTGTCATGTCCATGTTGGAGCGCCAAACGGACCAAGAACAACACGAAGGTAGAGTCTCAATTGATTTAGAGAATGTATCCAGGATCACTGACAACAATAACCATGAGCAGTATCCGGCTCCGTCAACCCCACAATTGAAACAAGGGGAAAGACTAATGGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGATTGTGATGGAGAGTCTAAATTTGTCGAAACTACATCTGGAAATTTGAATGCTGAAAGTATTCCTCAGCAAAGGGAATCTGAAATGACTCCGGTTAAGGAGGAAGAGAATTTTGCCAATGCTTCTAAGGGTGTATCTGCTGTTTCTCCACATCCACAAAATAGTAAGGTTCTCAGCAACGCCGACAGTAAAACATCATCTCCTAATAAAGCGGGTGTTCATGGTGATAAGTGTGAGATAAAAGCTAACCGGAAGAAGATGAAGGTAGACTGGACGCCAGAGCTTCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGATCAAGCCATTCCTTCTCGAATACTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATACAGAATGCATAAGAGACAAATCTTGCCTAAGGAAGAAAGTAGGAAATGGTTAAATCAAAGAGATGCAGTGCAAAGGAGCTATTTCCATCAAAGACCAATTATGGCCTATCCTCCATATCATTCTAATCACACCCTTCCTATGCCTCCTGTGTATCCTATGTGGGGCCCTCCTGGTTATCCCTTGTGGCAGCCTACAGAAAGCTGGCACTGGAAACCACTTCCAGGGATGCATGCAGATGCATGGGGCTGCCCAGTGATACCGCCTCCTCAAGCTCCTCCCTTTACCTACTCTCAGCAGAATGTAGATGCATTGGGCAATGCTAATGCTGTGGATTACACGTTTAGCATGCCGCCGCATAGTTCCTTTGAGCTTTATCCGGCAGAGGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAATAAGCCATGGCTACCTTTACCATTAGGCCTCAAACCTCCTTCCACAGATTGTGTGATAGCTGAACTTTCCAGGCAAGGCATTTCCGCCATCCCTCCTGGAAGCTGTTCTAACTTCTAA 1617 0.449 MVFTANDLQEWKDFPKGLKVLLLEGDSASAAELKDKLEAMDYNVSTFCDENEALSAISSRPEGFHIAIVEVSLSSCQGGFKFLQNAKDLPTIMTSNNHCLDTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGASVLSESLKPVKESVMSMLERQTDQEQHEGRVSIDLENVSRITDNNNHEQYPAPSTPQLKQGERLMDDGDCQEQTNCSTEKESGDCDGESKFVETTSGNLNAESIPQQRESEMTPVKEEENFANASKGVSAVSPHPQNSKVLSNADSKTSSPNKAGVHGDKCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRQILPKEESRKWLNQRDAVQRSYFHQRPIMAYPPYHSNHTLPMPPVYPMWGPPGYPLWQPTESWHWKPLPGMHADAWGCPVIPPPQAPPFTYSQQNVDALGNANAVDYTFSMPPHSSFELYPAEEVVDKVVKEAINKPWLPLPLGLKPPSTDCVIAELSRQGISAIPPGSCSNF* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2656 538 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lja4g2656 538 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Lja4g2656 538 ProSitePatterns DNA topoisomerase II signature. 22 30 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja4g2656 538 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lja4g2656 538 MobiDBLite consensus disorder prediction 207 229 - -
Lja4g2656 538 Gene3D - 305 367 - -
Lja4g2656 538 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 309 364 IPR006447 GO:0003677
Lja4g2656 538 SUPERFAMILY Homeodomain-like 308 366 IPR009057 -
Lja4g2656 538 MobiDBLite consensus disorder prediction 183 202 - -
Lja4g2656 538 Gene3D - 18 141 - -
Lja4g2656 538 MobiDBLite consensus disorder prediction 266 298 - -
Lja4g2656 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 528 - -
Lja4g2656 538 SMART REC_2 18 128 IPR001789 GO:0000160
Lja4g2656 538 Pfam Myb-like DNA-binding domain 312 361 IPR001005 -
Lja4g2656 538 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 528 IPR044825 GO:0003700|GO:0045893
Lja4g2656 538 MobiDBLite consensus disorder prediction 266 293 - -
Lja4g2656 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 306 365 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2656 Lja-Chr4 35985446 35993084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2656 1 535 Response Regulator Gene Family AT4G18020 50.534 2.53e-152 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja4g2656 Response_reg 1.4e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2656 - - gmx:100777535 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0180 2 1551440 1560432 Lja4g2656 4 35985446 35993084 PCT