Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2650 ATGGCTCCCTCTCTTTTGTGTCTTCTCCTTGCCACCTTTCTTTTCATGCAAACTCTAGCAGATACTTCATGCACGGATTGTTTTGTTCAATCCCGTGCATCATATTACCCCAATTCTGAAGTAAATGGCACAGACAGTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCATCAATGGCGGGGATGTATCGGCTGCATCTAGTCTTTATCAAGATGGAGTTGGCTGTGGTGCCTGTTACCAGGTGAGGTGTGCCAACAGCGCATATTGCTCAGGCAACGGTGTCACTGTAGTTGTAACTGACCAAGGCTCAGGTGATAACACTGACTTCATACTTAGCCAACGAGCCTTCGGTAGGATGGCTCAGAACTCTGATGCAGCTGCTTCTCTATTAGCTCTTGGCGTAGTTGATATTCAATACAGACGTGTTTCATGTAGCTACCCGAACAAAAACATGACAATTAAGATACATGAGAGCAGTAGCAACCCTCACTACTTGGCTTTTGTCATATGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACACAGAACTTTGTCTGTAAGTTACTGGACAGGAGTCATGGGGCAGTCTGGACCTCTACCTCTCCACCGAGTGGACCTTTGTCTTTAAGGATGCTGTTTAGTGATGAAGACGGAGAAGACACATGGGTCGTTCCCGTTAATAACATACCAGAAGACTGGAAGGCAGGAGAAACATACGACTCAGGGGTGCAAGTGGACCAGTAG 762 0.4672 MAPSLLCLLLATFLFMQTLADTSCTDCFVQSRASYYPNSEVNGTDSGACGFGSFGATINGGDVSAASSLYQDGVGCGACYQVRCANSAYCSGNGVTVVVTDQGSGDNTDFILSQRAFGRMAQNSDAAASLLALGVVDIQYRRVSCSYPNKNMTIKIHESSSNPHYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTSTSPPSGPLSLRMLFSDEDGEDTWVVPVNNIPEDWKAGETYDSGVQVDQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2650 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Lja4g2650 253 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 252 - -
Lja4g2650 253 Gene3D - 147 251 IPR036749 -
Lja4g2650 253 Gene3D - 16 146 IPR036908 -
Lja4g2650 253 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Lja4g2650 253 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja4g2650 253 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Lja4g2650 253 PANTHER EXPANSIN-B3 4 252 - -
Lja4g2650 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Lja4g2650 253 Pfam Lytic transglycolase 66 140 IPR009009 -
Lja4g2650 253 SUPERFAMILY PHL pollen allergen 150 247 IPR036749 -
Lja4g2650 253 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Lja4g2650 253 Pfam Expansin C-terminal domain 153 232 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2650 Lja-Chr4 35873096 35874988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2650 8 249 Expansin Gene Family AT4G17030 44.672 2.81e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2650 - - gmx:100794009 439.113