Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2617 ATGGCAGACCCACCTTCCTCCTCCTCCTCCCATCACACATACTCCTCCAACGCCTCTTACTTCCCCCCGCCCTTCCACCTCCAGCAACCCGCCGCCCACTACGACTACTCAGTCGCGTACGCTCCAGCACCGCCGGTCCAACCCCCTCCCGTCGCGTACCAGTACCCACAGGCGGCGCAGCAGTTCCAGCGCGACGCGCAGCAGCTCTTCCAGCGCGATGCGCAGACGATTACGCCGGAAGCCTTGGAGAGCGTGAAGGCCGCGATCGCCAACAGCGACATCGAGCACAAGGCGGACGGATCCAAGAAGAAGGCGGTTCCCCGGAAGGCCGCCGGGCAGACGTGGGAGGATCCGTCGCTGGCGGAGTGGCCGGAGAATGATCACCGGCTCTTCTGCGGCGACCTCGGGAATGAGGTGAACGACGACGTTTTGTCGAAAGCGTTCTCGCGGTTCCCTTCGTTTAACATGGCTAGGGTTGTCAGAGACAAGCGCTCTGGGAAGACGAAAGGCTATGGGTTCGTGAGCTTCGCTGATCCATTGGATCTCGCCGTCGCGCTCAAAGAGATGAGTGGGAAATACGTTGGGAATCGACCTATCAAGCTTACCAAGAGCAAGTGGAGGGAGAGAACGGATTACGATGCGGCGGAGAAGCAGAAGAAGCAATCCAAGAAGAAATTCAAGGCTTCCAGGGTGGGGGTGTTGCATTCTTGA 711 0.5977 MADPPSSSSSHHTYSSNASYFPPPFHLQQPAAHYDYSVAYAPAPPVQPPPVAYQYPQAAQQFQRDAQQLFQRDAQTITPEALESVKAAIANSDIEHKADGSKKKAVPRKAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPLDLAVALKEMSGKYVGNRPIKLTKSKWRERTDYDAAEKQKKQSKKKFKASRVGVLHS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2617 236 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 34 235 - -
Lja4g2617 236 MobiDBLite consensus disorder prediction 96 115 - -
Lja4g2617 236 MobiDBLite consensus disorder prediction 210 236 - -
Lja4g2617 236 MobiDBLite consensus disorder prediction 96 110 - -
Lja4g2617 236 PANTHER RNA-BINDING PROTEIN 42-LIKE 34 235 - -
Lja4g2617 236 SMART rrm1_1 129 202 IPR000504 GO:0003723
Lja4g2617 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 200 IPR000504 GO:0003723
Lja4g2617 236 MobiDBLite consensus disorder prediction 221 236 - -
Lja4g2617 236 Gene3D - 63 225 IPR012677 -
Lja4g2617 236 CDD RRM_RBM42 122 204 IPR034215 -
Lja4g2617 236 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g2617 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 206 IPR000504 GO:0003723
Lja4g2617 236 SUPERFAMILY RNA-binding domain, RBD 112 208 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2617 Lja-Chr4 34661551 34662941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2617 130 231 Eukaryotic Initiation Factors Gene Family AT1G71770 25.490 1.71e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2617 K25079 - mnt:21407250 297.745