Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2614 ATGGAATTTAGTGTTAAACACCAAATTGGCCTTGTTTGTGGCATGCTACTCTTAGCTGCACTGTGTAATTCACAGGAATCTTTTACTGACTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGACTCCAAGGGGAGCATGTGGCTTTGGTGAATATGGAAGAACAGTGAATGATGGCAGTGTTGCAGGAGTCTCTAGGCTATGGAAGAATGGAAGTGGCTGTGGTGCATGTTATCAGGTAAGGTGCAAAGTGCCACAATACTGTGATGAAAATGGAGCATATGTGGTGGTAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGTGGCTACTCAAGATTGGGAAGCAATGAAGCTGCATCTGCAGAATTGTTCAAATACGGTGTAGTGGATGTTGAATACAGAAGGGTACCCTGCAAATACAATGGCTATAACATAGTGGTTAAGGTCCATGAACACAGCAAAAACCCTAACTACTTTGCTGTCCTGGTACTCTATGTAGAAGGAATATACGATGTCACTGCTCTTGAGATGTGGCAGGAAGACTGCCAAGAATGGAGGCCTCTACGCAGGGCAACTGGGGCAGTGTTTGACTATGAGAACCCTCCAAGTGGTGAAATCAACTTGAGGTTCCAAGTGAGTGGCAAGGGAGGGCTTTATTGGGTGCAGTCCAAGAATGCTATACCTAGTGATTGGAGGGGTGGAGCTGCATATGACACCATGGTTCAGCTTAATTAG 756 0.455 MEFSVKHQIGLVCGMLLLAALCNSQESFTDSRATYYGSPDCYGTPRGACGFGEYGRTVNDGSVAGVSRLWKNGSGCGACYQVRCKVPQYCDENGAYVVVTDYGEGDRTDFIMSPRGYSRLGSNEAASAELFKYGVVDVEYRRVPCKYNGYNIVVKVHEHSKNPNYFAVLVLYVEGIYDVTALEMWQEDCQEWRPLRRATGAVFDYENPPSGEINLRFQVSGKGGLYWVQSKNAIPSDWRGGAAYDTMVQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2614 251 Gene3D - 146 247 IPR036749 -
Lja4g2614 251 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Lja4g2614 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 251 - -
Lja4g2614 251 PANTHER EXPANSIN-B3 4 251 - -
Lja4g2614 251 SUPERFAMILY Barwin-like endoglucanases 16 149 IPR036908 -
Lja4g2614 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lja4g2614 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lja4g2614 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Lja4g2614 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lja4g2614 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Lja4g2614 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Lja4g2614 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Lja4g2614 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Lja4g2614 251 Gene3D - 18 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2614 Lja-Chr4 34595014 34597384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2614 1 251 Expansin Gene Family AT4G17030 56.349 6.28e-106 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2614 - - gmx:100779487 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0147 2 1226546 1228528 Lja4g2614 4 34595014 34597384 PCT