Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2613 ATGGAACTTAATTTCAAGCACCAACTTGGCCTTATTTGTGTCATACTGATATTTCCAGCATTGTGTAGCGGCAAGGAGTATTATACTAAATCCAGAGCAGCATATTATGGCACCTCAGATGGCTATGGAAATCCAAGAGGAGCTTGTGGGTTTGGAGGCTATGGAAGAACAGTCAATGATGGCAATGTGGCAGCCGTGTCTGCTAAGCTATGGAAAAATGGAGGTGGTTGCGGTGCATGTTATCAGGTAAGGTGTAAAATACCACTATACTGTGATTACAATGGAGCATATGTGGTGGCAACAGATTCTGGTGAGGGAGATAGAACAGACTTCATCTTGAGCCATCACGCCTTCTCAAAGTTAGGACGAAACAAAAATGCATCTGAAGCGCTGAAGAAATACGGTGTGCTAGATGTTGAATACAAAAGGGTCCCCTGCACATTCAAGGGAAACAACATCGTATTTCAGATCAATGAACACAGCAGTAACCCCGGTTACTTTGCTATCGTGATTCTCTATGTTGGAGGAACATCAGATATCACTTCTGTTGAGATTTTGAGGAAAGAGTACCGCAAATGGGAGCCTCTACGAAGGGTTTATGGTGCAGTGTTTGACATTGCTAACCCACCAACAGGTGAAATCCGGTTGAAGTTCCTAGTGAGTGATGGTAGTGCTGGGTTTCATTGGGTGCAGCCAAAGATTGCAATCCCTGCAAATTGGAAGGCTGGAGCTACTTATTCCGCCAAGTTAGCTTAA 756 0.4405 MELNFKHQLGLICVILIFPALCSGKEYYTKSRAAYYGTSDGYGNPRGACGFGGYGRTVNDGNVAAVSAKLWKNGGGCGACYQVRCKIPLYCDYNGAYVVATDSGEGDRTDFILSHHAFSKLGRNKNASEALKKYGVLDVEYKRVPCTFKGNNIVFQINEHSSNPGYFAIVILYVGGTSDITSVEILRKEYRKWEPLRRVYGAVFDIANPPTGEIRLKFLVSDGSAGFHWVQPKIAIPANWKAGATYSAKLA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2613 251 Gene3D - 147 249 IPR036749 -
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lja4g2613 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja4g2613 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Lja4g2613 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Lja4g2613 251 PANTHER EXPANSIN-B3 4 250 - -
Lja4g2613 251 SUPERFAMILY Barwin-like endoglucanases 20 151 IPR036908 -
Lja4g2613 251 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Lja4g2613 251 Gene3D - 20 146 IPR036908 -
Lja4g2613 251 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Lja4g2613 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Lja4g2613 251 Pfam Lytic transglycolase 64 141 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2613 Lja-Chr4 34550277 34551826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2613 9 250 Expansin Gene Family AT4G17030 52.066 1.07e-90 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2613 - - gmx:100779487 359.377