Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2612 ATGGAACCTAATTTCAAGCACCAAATTGGCCTTATTTGTGTCCTACTAATATTTCCAGCGTTGTGTAGCGGCAAAGAGTATTATACTAAATCCAGAGCATCTTATTATGGCACCTCAGATGGCTATGGGACTCCAAGTGGAGCTTGTGGCTTTGGAGGATATGGAAGAACAGTCAATGGTGGCAATGTGGCAGCCGTGTCTGCTAAGCTATGGAAGAATGGAGGTGGTTGCGGTGCATGTTATCAGGTAAGGTGCAAAATAGCACAATACTGTGATTACAATGGAGCGTATGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCTTAAGTCCCCGCGCCTTCTCAAAGTTAGGAAGAAACAAAAATGCATCTGAAGCGCTAAAGAAATACGGTGTGCTTGATGTTGAATACAAAAGGGTCCCCTGCACATTCAAGGGAAACAACATCGTGTTTCAGATCAATGAACACAGCAGCAACCCGGGTTACTTTGCGATCGTAATTCTCTATGTTGGAGGAACATCAGATATCACTGCTGTTGAAATTTTGAGGAAAGAGTACCGCCAATGGGAGCCTCTACGAAGGTCATATGGTGCAGTGTTTGACATTGCTAACCCACCAACAGGTGAAATCCGGTTGAAGTTTCAAGTGAGTGATGGCACGGAACCAAAGATTGCAATCCCTGCAAATTGGAAGGCAGGAACTACTTATTCCACCAAATTAGCTTAA 738 0.4417 MEPNFKHQIGLICVLLIFPALCSGKEYYTKSRASYYGTSDGYGTPSGACGFGGYGRTVNGGNVAAVSAKLWKNGGGCGACYQVRCKIAQYCDYNGAYVVATDYGEGDRTDFILSPRAFSKLGRNKNASEALKKYGVLDVEYKRVPCTFKGNNIVFQINEHSSNPGYFAIVILYVGGTSDITAVEILRKEYRQWEPLRRSYGAVFDIANPPTGEIRLKFQVSDGTEPKIAIPANWKAGTTYSTKLA* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2612 245 Gene3D - 20 146 IPR036908 -
Lja4g2612 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Lja4g2612 245 PANTHER EXPANSIN-B3 4 244 - -
Lja4g2612 245 SUPERFAMILY PHL pollen allergen 152 241 IPR036749 -
Lja4g2612 245 Gene3D - 147 243 IPR036749 -
Lja4g2612 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 242 IPR007117 -
Lja4g2612 245 Pfam Lytic transglycolase 64 141 IPR009009 -
Lja4g2612 245 SUPERFAMILY Barwin-like endoglucanases 19 151 IPR036908 -
Lja4g2612 245 Pfam Expansin C-terminal domain 153 224 IPR007117 -
Lja4g2612 245 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 244 - -
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja4g2612 245 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2612 Lja-Chr4 34541599 34543205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2612 11 244 Expansin Gene Family AT4G17030 47.280 6.73e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2612 - - gmx:100779487 344.354