Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2610 ATGGGGAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAACGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATTCTCGGGCAGACAATGTTGATAATGACGATCAAAGGGTTTCCAGGCTAAAGAACATGTCATTAAATAAGAACAAAGAAGTGAAATTTGTGAAAAGAAAGCTGAACCATGATAATGCTGCATCTGGAGGGTTTACCCCTGATTATTATCAAGGATTCCAAAAGTTTGTGGATGAAGATACTAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCATGGATGCTAGTGATTTGACAGGACCTGCTCAGTCAGTCGTCTGGGATACGGTGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCAAAGCATTCATCTGTTGAGAAGCTCACAAAAGACTTATGTTCTATTCTTCATGAACAGCAGTCTTATTTTTCTGCTACTTCTGAAGAGGAGCTTCTTTTTGAGAGTGAAACACCGATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCACCCTAACTCCATAGCTCGGGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAGTGAGGCATACTCATATTCTGGTACCATTCCTATGCATAGTGATTCCAGTGGCATGAATTTCTCATCTCAGGGTGTTGAAAAGGTTAGAAAATCTGCTGGCCATACAATCCAACTGGAGCAACTTGAAAGGGGCAAGTCTCAGCTTGAAAAACTAGATGTTCCTGGAAATCATGTTTCATCACTATGCTCAATAGATTTAAATGATGTAGTGAACTATGAGGTGTTTTCAAGAAACTTGACAAATGAAGAGAAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCTAAACTTCCTGACAGTCTTAAAATCATGTTCGATAGCTTTCAATTCAAGGAGAACTTCAGTTATTTTCAGCAACTTCTTGGGGAAGGTGTCTTTGATATCTCTTTGGTAGGGGCAAAACCTGAAGCCTGCAAGACATTAAAAAGGCTTGCATTATCTAATCTATCAAAGTCAAAATGGGTAGAATGCTATAATTCTCTCAAGAAAGGTGGAAACCAAGCTGGAAAATGTATTGATCTGGGATCTACTGCTATGGCATCAAGTAATGTTGCAAATGTCAAGAGATTGCGGTACAGCCAGAATCAGAACTTTCCAGAATTGAAGACAATGAGGAGCCCCAAGAGGGTGACCATAAAGGCTAGCTGTGAAGGCAAAGAAGTTGCAGAAGAAGGCTCTAACTGCAGTCCAAGAAGCCTATTTGCATTGCCAGGTGATGGTAGCTTGTGCATGCTGGATTCTTTGAACTTTGTTGCTGAGAGTTCTGATCAGGATTTGCTGCTAGAGGTGCCATCTAACAGCTCTTTTCCACAAGCAGAGCTCCTCCACCCAACCTCAAGCTCCTGGTGTCCATGCCAGCACCAGTAG 1587 0.4272 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHSRADNVDNDDQRVSRLKNMSLNKNKEVKFVKRKLNHDNAASGGFTPDYYQGFQKFVDEDTSNRSSSGSAISNSESCAQFGGMDASDLTGPAQSVVWDTVVPSKKRTCAGRPKHSSVEKLTKDLCSILHEQQSYFSATSEEELLFESETPMVSVEIGHGSILIRHPNSIAREEESEASSLSVDNKQCLMSEAYSYSGTIPMHSDSSGMNFSSQGVEKVRKSAGHTIQLEQLERGKSQLEKLDVPGNHVSSLCSIDLNDVVNYEVFSRNLTNEEKQQLLKYLPVVDTAKLPDSLKIMFDSFQFKENFSYFQQLLGEGVFDISLVGAKPEACKTLKRLALSNLSKSKWVECYNSLKKGGNQAGKCIDLGSTAMASSNVANVKRLRYSQNQNFPELKTMRSPKRVTIKASCEGKEVAEEGSNCSPRSLFALPGDGSLCMLDSLNFVAESSDQDLLLEVPSNSSFPQAELLHPTSSSWCPCQHQ* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2610 528 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lja4g2610 528 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Lja4g2610 528 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
Lja4g2610 528 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lja4g2610 528 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lja4g2610 528 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Lja4g2610 528 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
Lja4g2610 528 PANTHER OSJNBB0038F03.10 PROTEIN 1 520 IPR044589 -
Lja4g2610 528 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 520 - -
Lja4g2610 528 Pfam Asx homology domain 293 368 IPR028020 -
Lja4g2610 528 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2610 Lja-Chr4 34454990 34461735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2610 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.558 1.61e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja4g2610 ASXH 9.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2610 - - gmx:100799745 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0144 2 1194309 1200940 Lja4g2610 4 34454990 34461735 PCT