Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2598 ATGCAGATATTTTGGCATCATAAATTGTCAGAACTTCCAATGGCTGGTACAAACAGCATGAGGCATCGCAAACAAGATGTAAACTATGCAGATCGAAGCAATCATGAAAGTGATGAACACAGTTCTGATCCAGATTATTCAAGGGGTATGCGTCAAGGAGGACGAAAAAAAAGAAAGAGCACAAGAGGTGGACAGGGTTTTGGAGGTGCAAAAACAAGATCATCCTCTCAAAGAGCAATGCAGAGCTCAGGTGCAGATTTGAATGCAAGATATGGACATGGTAGACGAGGTGAAAAGACAACTGTATCCACAACACTGGACATGGAGACTCAAATGGTGGATTTAATTAATGTTCCATTTGCTGAAATGGTGGAACCAAGTTTAGATTCAGTTGCAAGGCATGGAGCGAGTCGTGGACAAGGTGGGAACTCAAGCTCTACAAGAGAAATGGAGACTGAACTTGTGGATTCAGGTGTGGTTGTGACTGATAGAAACGCAGCACAGAGTCATGGACAAGGTGGAAAAGGTCATAGGCATGGTGGGCATGGTGGTGGACAGGGGGGACAAAGGTGTAGGCATGGCACAAAGAGTCCTGGATCTCAGCAAAGGGAAGCTGACGGGAAAAGAAACAAGGAAACTGGTAATCCTGGACCAAGTTCAATTGTGAAAAAAGGTCCATCATCATCTGAAGGACAAGCTATAAACGTGAGGAGAGGTTCACCTTTACCTCTACAAGGAAGGTCATGTCAAAGAACCATTCTGTCATGGTTGATCGATCGTGAGGTTATTAAAGAATTTGAACAAGTGGACTATTTTTATGGGTCTGAGCAGGTACCAAACGCGACGGGATTAATTACCAGGGGTGGTATATTATGCAACTGCTGCCAGAGGGAAATATCAGTATGGACCTTTGAGAAGCATGCTGGAAGTGAACTTGGAGAACCATATGAACATATGTACCTCCCTCGCAAAGATGAAAATACATGCCTCCAGGACCTCCTGATTACAGCTTGGCTTAATGCAAACGAGATTAAACTCCGATGTCCGTTTTCGTATGTGCCCAAAGAAAATGCTGCTGAACAAAATGATGGTGCATGTTCAATCTGTGGAGATGGGGGAGACTTGATCTCCTGTGACACATGTCCCTCCACATATCATTCTTTATGCATATCGAAGAGGGTGCCCCACAGTGGTTGGTTGTGTCCATATTGTATATGCAAATACTGCAGGCGGGGGGAAGAGAGTAAGGAATTAGTCACCTGCTCCCAATGCGATAAGAAATTTCATTGGGGGTGCTTGAAACATTATGAAAAAAAATTCTCAGAAGAAACCCTAGGCCCTGGCTGTACAAGATTATACTGTGGGCCAGGCTGCCGACAGATCTATGAGAAACTGGAGAACTCATTGCGAATCAGAAATGATATCTCTGAAAGCTACTCTTGGAGGGTTATCCATCCAAAAGCTGTTATCTCTGCTTCTAGGAATGCATATCTAGAAAATAATTTGAAGGTTGCAGTTACTTCGAAATTAATGGATGAAGCTTTTGCGACAATCATTGATAAAAAGACAGGCATCGATGTGGTGCAAAGTATTGCTTATAGTCGCGGAGCAAACCTCAGAAGGGTAGATTTCAGTCGCTTTTATACCTTTGTCCTGGAGAAAGACGATGCGATCTTAGCTGCTGCTTCCATAAGGTTCCATGGGAGAGGGATGGCGGAAATGCCCTTTATTGCCACAGATAAGGCGTACAGGTGCCAAGGAATTTGCCGGTTGTTAATGAAGGAAATTGAATCTTTCCTATGCAGCCTTCAGGTCAAAACCTTGGTTATTCCATCTGTTCCTGAGAATGTTGAAATGTGGACGCAGAAGTTCATTTTCAATTTGGTCAATGAGGTTAGCCGAGAGATAAAGAAAGAAATATCCTCTCACAACATCTTGACGTTCCCTCGAACTATGATTATGTACAAAGATTTGTGTGTGAGAACATCAGATGTTATCCAAGGCGCAGACGATCAAGTTGAATCTCAGAATGACGAGGAACCACTACTAGCACTTCAAACTGAAGTCCATGAACCACAAAGGGAGCAGGCTGAGAGATCACATCTTGATTTGAATGTGGAACCTCTGCAGGACTGTTAA 2139 0.4348 MQIFWHHKLSELPMAGTNSMRHRKQDVNYADRSNHESDEHSSDPDYSRGMRQGGRKKRKSTRGGQGFGGAKTRSSSQRAMQSSGADLNARYGHGRRGEKTTVSTTLDMETQMVDLINVPFAEMVEPSLDSVARHGASRGQGGNSSSTREMETELVDSGVVVTDRNAAQSHGQGGKGHRHGGHGGGQGGQRCRHGTKSPGSQQREADGKRNKETGNPGPSSIVKKGPSSSEGQAINVRRGSPLPLQGRSCQRTILSWLIDREVIKEFEQVDYFYGSEQVPNATGLITRGGILCNCCQREISVWTFEKHAGSELGEPYEHMYLPRKDENTCLQDLLITAWLNANEIKLRCPFSYVPKENAAEQNDGACSICGDGGDLISCDTCPSTYHSLCISKRVPHSGWLCPYCICKYCRRGEESKELVTCSQCDKKFHWGCLKHYEKKFSEETLGPGCTRLYCGPGCRQIYEKLENSLRIRNDISESYSWRVIHPKAVISASRNAYLENNLKVAVTSKLMDEAFATIIDKKTGIDVVQSIAYSRGANLRRVDFSRFYTFVLEKDDAILAAASIRFHGRGMAEMPFIATDKAYRCQGICRLLMKEIESFLCSLQVKTLVIPSVPENVEMWTQKFIFNLVNEVSREIKKEISSHNILTFPRTMIMYKDLCVRTSDVIQGADDQVESQNDEEPLLALQTEVHEPQREQAERSHLDLNVEPLQDC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2598 712 ProSitePatterns Zinc finger PHD-type signature. 366 404 IPR019786 -
Lja4g2598 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 459 IPR013083 -
Lja4g2598 712 MobiDBLite consensus disorder prediction 16 106 - -
Lja4g2598 712 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 539 631 IPR016181 -
Lja4g2598 712 Gene3D - 522 640 - -
Lja4g2598 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 406 IPR013083 -
Lja4g2598 712 MobiDBLite consensus disorder prediction 132 153 - -
Lja4g2598 712 Pfam Tify domain binding domain 283 321 IPR032308 -
Lja4g2598 712 SUPERFAMILY FYVE/PHD zinc finger 405 438 IPR011011 -
Lja4g2598 712 MobiDBLite consensus disorder prediction 137 152 - -
Lja4g2598 712 MobiDBLite consensus disorder prediction 166 241 - -
Lja4g2598 712 MobiDBLite consensus disorder prediction 213 235 - -
Lja4g2598 712 Pfam Acetyltransferase (GNAT) family 548 618 IPR000182 GO:0016407
Lja4g2598 712 MobiDBLite consensus disorder prediction 24 51 - -
Lja4g2598 712 SMART PHD_3 406 450 IPR001965 -
Lja4g2598 712 SMART PHD_3 365 405 IPR001965 -
Lja4g2598 712 ProSiteProfiles Zinc finger PHD-type profile. 363 407 IPR019787 -
Lja4g2598 712 PANTHER PHD FINGER PROTEIN 12 229 662 IPR042163 GO:0003714|GO:0045892
Lja4g2598 712 SUPERFAMILY FYVE/PHD zinc finger 357 406 IPR011011 -
Lja4g2598 712 PANTHER GNAT FAMILY ACETYLTRANSFERASE 229 662 - -
Lja4g2598 712 CDD NAT_SF 550 610 - -
Lja4g2598 712 MobiDBLite consensus disorder prediction 197 211 - -
Lja4g2598 712 MobiDBLite consensus disorder prediction 67 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2598 Lja-Chr4 33877158 33885909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2598 248 658 PHD Transcription Factor Family AT1G05380 37.559 1.34e-88 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2598 - - lja:Lj0g3v0191649.2 1403.65