Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2597 ATGTTCCTTGCTGAATCTAAACGAATCAAAATGAGAAATTCAGCTATGGGGAAACAAGATATGCAGAACCTGTTGCAGATGGGGAAACCTGCAATCCATTGGAGCGAATGGGTACCTGGGAATGAAAGCTTCGCAGAAAGCTTGCACTTTGCTCCACCAACATGCTTCCAACATTGCATCCAACAACCTGGGTTACGGAATCTAGAAACAACATTAAATGGTAAAGCTGTTTTATTTTTTTTTATTTTTAAATTGAGGAGTGGGATTAGAGTCACTTATCTTATGGGGGTACCTGAAAGGGAAGAGCATTTTCTCGATTTCCGCTGGCATTTCATAGTAGATTATTTGCTTCTGCAGCGATCACTGCTCAAAGATTTGCAACAGCAAGAATCTAGGGCAAAGATCTCATTCCAAATTGAAGTCGCCAGGCCCCCTTCTCTCCCCCACTGCATTGACGATGAGAGACTTAGACTGAGACACTTTCTTGCTTCAGAATCCCCCATTCGTGAAGCCTGCATTTTGCTTGGGCCTTTCCTGTCGTTCATCCGTATATTTTGGCATCATAAATTTTCCGAACTTCCAATGGCTGGTACAAGCAGCATGACCCTTAGGTATCGCAAACAAGATGTAAACTATGCAGATCGAAGCAATCATGAAAATGATGAACACAGTTCTGATCCAGATTATTCAAGGGGTATGCGTCAAGGAGGACGAAAAAAAAGAAAGAGCACAAGAGGTGGACAGGGTTTTGGAGGTGCAAAAACAATATCATCCTCTCAAAGAGCAATGCAGAGCTCAGGTGCAGATTTGAATGCAAGATATGGACATGGTAGACGAGGTGAAAAGACAACCGTATCCACAACACTGGATATGGAGACTCAAACGGTGGATTTAATTGATGTTCCATGTGCTGATAACACCATTGAGACTGAAATGGTGGAACCAAGGTTAGATTCAGTTGCAAGGCATGGAGAGAGTCGTGGACAAGGTGGGAACTCAAGCTCTACAAGAGAAATGGAGACTGAACTTGTGCATTCAGGTGTGGTTGTGACTGATAGAAATGCAGCACAGAGTCATGGACAAGGTGGAAAAGGTCATAGGCAGGGTGGGCATGGTGGTGGACAGGGGGGACAAAGGGGTAGGCATGGTACAAAGAGTCCTGGATCTCAGCAAATGGAAGCCGAGGGGAAAAAAAACAAGGAAACTGGTAATCCTGGACCAAGTTCAATTGTGAAAAAAGGTCCGTCATCATCTAAAGGACAAGCTATAAACATAAGGAGAGGTTCACCTTTACCTCTACAAGGAAGGTCATGTCAAAGAACCATTCTGTCATGGTTGATTGATCGTGAGGGTATTAAAGAATTTGAACAAGTGGGCTATTTTTATAGGTCTGAGCAGGTACCAACCGCGACGGGATTAATTACCAGGGGTGGTATATTATGCTACTGCTGCCAGAGGGAAATATCAGTATGGACCTTTGAGAAGCATGCTGGAAGTGATCTTGGAGAACCATATGAACATATGTACCTCCTTTGCAAACATGAACGTACGTGCCTCCTTCGCAAACATAAAGGTACGCGCCTCCAGGACCTCCTGATTACTGCTTGGCATAATGAAAAGGAAAAACTCCGATGTCGGTTTTCGTATGTGCCCAAAGAAAACAGTGCAGAACAAAATGATGGTGCATGTTCAATCTGTGGAGATGGGGGAGACTTGATCTGCTGTGACACATGTCCTTCCACATATCATTCTTTATGTATGGATATGGAGAGGGTGTCCCAGAGTGGTTGGTTGTGTCCATATTGTAAATGCAAATACTGCAGGCTGGGGGAAGAGAGTCAGGTATTTGTCACATGCTCCCAATGCGAAAAGAAATTTCATTCGGGGTGCTTGAAACTCTATGAAAAAGATTTCTCAGAAGAATTCCTAGACCTTGGCCGTACAAAATCATACTGTGGGCCAGGCTGCCGAGAGATCTATGAGAAACTGGAGAACTCATTGGGAATCAGAAATGATATCTCTGAAAGCTACTCTTGGAGGGTTATCCATCCAAAAGATGTTATCTCTGCTTCTAATAGTACATATCTAGAAAATAATTTGAAGGTTGCAGTTACTTCGATGTTAATGGATGAGACTTTTGCGACAATTATTGATAAAAAGACGGGCATCAATGTTGTGCGAAGTATTGTTTACAGTCACAGAGCAAACCTCAGTAGGGTAGACTTCAGTCGCTTTTATACCTTTGTCCTGGAGAAAGACGATGCGATCTTAGCTGCTGCTTCCATAAGGTTCCATGGGAGAGGGATGGCGGAAATGCCCTTTATTGCCACAGTTAAGGCATACAGGGGCCAAGGAATTTGCCGGTCATTAATGAAGGAAATTGAATCCTTCCTATGCAGCCTTAAGGTCAAAACCTTGGTTATTCCATCTGTTCCTGAGACTGTTGAAATGTGGACTCAGAAGTTCAATTTCAATGAGGTCAATGAGGTTAACAGAGAGATGAAGAAAGAAATATACGCTCATAACATCTTGATGTTCCCTCGAACTATGATTATGTACAAAGATTTGTTTGTGAGAATATCAGATGTATCCAAGGCAATGCAGAATCTCAGAATGACGAGGAACCACCACAAGCACTTCGATTTGAAGTCCAGGAACCACAAAGGGAGCCGGCTGAGAGACCACATCTTGATTTGA 2697 0.4316 MFLAESKRIKMRNSAMGKQDMQNLLQMGKPAIHWSEWVPGNESFAESLHFAPPTCFQHCIQQPGLRNLETTLNGKAVLFFFIFKLRSGIRVTYLMGVPEREEHFLDFRWHFIVDYLLLQRSLLKDLQQQESRAKISFQIEVARPPSLPHCIDDERLRLRHFLASESPIREACILLGPFLSFIRIFWHHKFSELPMAGTSSMTLRYRKQDVNYADRSNHENDEHSSDPDYSRGMRQGGRKKRKSTRGGQGFGGAKTISSSQRAMQSSGADLNARYGHGRRGEKTTVSTTLDMETQTVDLIDVPCADNTIETEMVEPRLDSVARHGESRGQGGNSSSTREMETELVHSGVVVTDRNAAQSHGQGGKGHRQGGHGGGQGGQRGRHGTKSPGSQQMEAEGKKNKETGNPGPSSIVKKGPSSSKGQAINIRRGSPLPLQGRSCQRTILSWLIDREGIKEFEQVGYFYRSEQVPTATGLITRGGILCYCCQREISVWTFEKHAGSDLGEPYEHMYLLCKHERTCLLRKHKGTRLQDLLITAWHNEKEKLRCRFSYVPKENSAEQNDGACSICGDGGDLICCDTCPSTYHSLCMDMERVSQSGWLCPYCKCKYCRLGEESQVFVTCSQCEKKFHSGCLKLYEKDFSEEFLDLGRTKSYCGPGCREIYEKLENSLGIRNDISESYSWRVIHPKDVISASNSTYLENNLKVAVTSMLMDETFATIIDKKTGINVVRSIVYSHRANLSRVDFSRFYTFVLEKDDAILAAASIRFHGRGMAEMPFIATVKAYRGQGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNILMFPRTMIMYKDLFVRISDVSKAMQNLRMTRNHHKHFDLKSRNHKGSRLRDHILI* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2597 898 ProSiteProfiles Zinc finger PHD-type profile. 560 605 IPR019787 -
Lja4g2597 898 SUPERFAMILY FYVE/PHD zinc finger 557 608 IPR011011 -
Lja4g2597 898 MobiDBLite consensus disorder prediction 212 289 - -
Lja4g2597 898 Gene3D - 725 842 - -
Lja4g2597 898 MobiDBLite consensus disorder prediction 212 234 - -
Lja4g2597 898 Pfam PHD-finger 563 605 IPR019787 -
Lja4g2597 898 PANTHER PHD FINGER PROTEIN 12 418 859 IPR042163 GO:0003714|GO:0045892
Lja4g2597 898 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 709 839 IPR000182 GO:0016407
Lja4g2597 898 Pfam Tify domain binding domain 472 510 IPR032308 -
Lja4g2597 898 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 617 IPR013083 -
Lja4g2597 898 ProSitePatterns Zinc finger PHD-type signature. 563 602 IPR019786 -
Lja4g2597 898 MobiDBLite consensus disorder prediction 402 424 - -
Lja4g2597 898 CDD NAT_SF 748 808 - -
Lja4g2597 898 MobiDBLite consensus disorder prediction 354 431 - -
Lja4g2597 898 PANTHER GNAT FAMILY ACETYLTRANSFERASE 418 859 - -
Lja4g2597 898 MobiDBLite consensus disorder prediction 309 341 - -
Lja4g2597 898 SMART PHD_3 562 603 IPR001965 -
Lja4g2597 898 SMART PHD_3 604 657 IPR001965 -
Lja4g2597 898 MobiDBLite consensus disorder prediction 250 267 - -
Lja4g2597 898 MobiDBLite consensus disorder prediction 326 341 - -
Lja4g2597 898 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 740 838 IPR016181 -
Lja4g2597 898 SUPERFAMILY FYVE/PHD zinc finger 604 636 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2597 Lja-Chr4 33837285 33845496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2597 373 857 PHD Transcription Factor Family AT1G05380 34.951 1.40e-95 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja4g2597 PHD 1.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2597 - - lja:Lj0g3v0191649.2 1078.93