Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2594 ATGTACGAACAGAGTAATTATGAGTCCGATTGGGCCCTTGTAGACTCCCTTCGCCGCCACTTCCTGGGTGAGTCCGAACAAAGATTCGGAGCCCCGACATCAGTTCCGGGTAACGCCCGGGTTTACTCTCGGAGCTCCAGTTTCAGCAGCTTGTATCCGTGTCTGAGTGAAGATTGGGGCGAGCTCCCTCTCAAGGAAGATGATTCCGAAGACATGGTGCTCTACGGCGTGCTACGCGACGCCGTTAACGTCGGGTGGGTCCCGTCCCTCCATGCCGGGTGCGGGTCACCTGAAAGTTTCTCGTCGGGTTTGGTGATCAAGCCGGAGCCGGACGTCATGCCGGTGAGAGAGAGCTTCCCGGCAGTAGTACCGGAGCCTCCGAAGGTGACTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATCCGGGACCCGGCCAAAAACGGGGCTCGGGTCTGGCTCGGAACGTTTGAGACCGCCGAGGATGCCGCGTTGGCTTACGATCGAGCTGCGTACAGGATGAGGGGCTCGAGGGCGATGCTAAATTTTCCGCTCCGGGTAAACTCCGGTGAACCCGACCCGGTTAGAGTGGCTTCGAAGCGGTCTTCGTCGGAGAGTTGCTCTTCTTCGTCGGAGAGTGGGTCGCCGGCGAAGAGGAAGAAGGTGGTGGTGACTGCCCAGGTGGGATTGAAAACGGGGCAAGTGGGAAGTCAAGTGGCACAGGTTACACCTGGCGAGCAGTTATTGGTCAGTTAA 786 0.598 MYEQSNYESDWALVDSLRRHFLGESEQRFGAPTSVPGNARVYSRSSSFSSLYPCLSEDWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLHAGCGSPESFSSGLVIKPEPDVMPVRESFPAVVPEPPKVTPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVASKRSSSESCSSSSESGSPAKRKKVVVTAQVGLKTGQVGSQVAQVTPGEQLLVS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2594 261 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 SUPERFAMILY DNA-binding domain 136 196 IPR016177 GO:0003677
Lja4g2594 261 PANTHER DNA-BINDING DOMAIN 26 239 IPR044808 GO:0003700|GO:0009873
Lja4g2594 261 MobiDBLite consensus disorder prediction 209 226 - -
Lja4g2594 261 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 MobiDBLite consensus disorder prediction 197 231 - -
Lja4g2594 261 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 Gene3D AP2/ERF domain 135 197 IPR036955 GO:0003700|GO:0006355
Lja4g2594 261 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Lja4g2594 261 PANTHER BNAANNG21280D PROTEIN 26 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2594 Lja-Chr4 33773855 33775096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2594 1 260 AP2-EREBP Transcription Factor Family AT4G17500 56.934 2.99e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2594 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2594 K09286 - gmx:100803653 317.775