Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2593 ATGGCTTATGCTGATGAAATTTCAGCTCTCAAACAAATCAAATTGCATCTCCTAGGTGAACTCTCTCCACTCCCAACTCCCAAAAACAATCAACAACCACCACAACAACAACAACAACCTTGGTTTCAACAATTTGATGAAATAACAACATCAAACACTAGCCCCACTCAATCTTCTTCCTCTGATTCCTCTTCCTCTTCTTCCAACATCTCTCTAGATCATTACTTTGATACACAAAATCAACTTCCCCTGTTTGAATTTGAGTTCAAACCACACCCGATTGACCTACAAACACCGGTTGCTCCGCCGCAACGACTCGCACGGAAGCCCTCGCTGCAAATCGCTCTACCTAAGAAAACCACCGAGTGGATCCAGTTCGGAAACCCGGATCCGAATCCGGACCCGGTCGTGCAGGCCCAACCTGAGCCCGCGGAGAAGAAACAGCACTACAGAGGTGTCCGCCAGAGGCCGTGGGGGAAGTTCGCCGCTGAGATTCGCGACCCGAACAAGCGTGGTTCGAGGGTGTGGCTCGGGACTTTCGACACCGCCATCGAAGCTGCTAAGGCTTATGACCGGGCTGCGTTCAAGCTTCGCGGGTCGAAAGCCATACTGAACTTTCCTCTTGATGTCGCCGCCGCCGCTGCCTCCGGCGACGGAGAGAGTGACAGGAAACGCCGCCGTGAAGAGGAGGTGGTGGAAGTTAAGGCGGTGGTGAAAAGGGAGAAAACCACGGAATCGGAAGTTAAGGAGACGCCGTTGACGCCGTCTATTTGGACCGGGGTATGGGACAGTGATGTGAAGGGGATTTTCACGGTGCCGCCGTTGTCGCCGTTATCTCCCCTTCCGGCTTTTCATTCACAGTTAATGATGGTGTGA 876 0.524 MAYADEISALKQIKLHLLGELSPLPTPKNNQQPPQQQQQPWFQQFDEITTSNTSPTQSSSSDSSSSSSNISLDHYFDTQNQLPLFEFEFKPHPIDLQTPVAPPQRLARKPSLQIALPKKTTEWIQFGNPDPNPDPVVQAQPEPAEKKQHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLDVAAAAASGDGESDRKRRREEEVVEVKAVVKREKTTESEVKETPLTPSIWTGVWDSDVKGIFTVPPLSPLSPLPAFHSQLMMV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2593 291 MobiDBLite consensus disorder prediction 21 71 - -
Lja4g2593 291 MobiDBLite consensus disorder prediction 31 71 - -
Lja4g2593 291 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 SUPERFAMILY DNA-binding domain 149 209 IPR016177 GO:0003677
Lja4g2593 291 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
Lja4g2593 291 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 277 - -
Lja4g2593 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 5 277 - -
Lja4g2593 291 Gene3D AP2/ERF domain 148 210 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2593 Lja-Chr4 33694144 33695300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2593 1 291 AP2-EREBP Transcription Factor Family AT5G47230 44.771 2.65e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g2593 AP2 3.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2593 K09286 - gmx:100816039 273.863