Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2589 ATGCATATAGAGGAATTGAAGGTAGGTGAGGTGGGAGAAGGTGGAGAGGAAGGGAGATCGAGCTTCGTCGGCTCGGATGCGAAAAGGGTTCTGGTTGGAGCAGGGGCTCGCGTGCTATTCTATCCTACGCTGTTTTATAATGTCGTTAGGAATAAGATTCAGGCTGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTGAAGGAGCTTGGTGTTCGCGGTGTCATCACATTGAATGAGCCATATGAGACTTTGGTTCCTACCGCATTATATCATGCTCATGGAATTGATCATCTGGTGATTCCCACTAGAGATTACTGTTTTGCTCCATCATTGCATGACCTATGCTGTGCTGTGGACTTCATACATGGAAATGCATTGTCTGGACGAACTACATATGTCCACTGCAAAGCTGGACGGGGTCGCAGCACAACTGTTGTTATTTGTTATCTGGTTCATTACAAACAGATGACACCTGATGCTGCGTATGAATATCTGAAGTCAATTCGGCCTAGGGTGCTTTTGGCTTCCGCTCAGTGGCAAGCTGTTCAGGAATACTACTACCACCTTATGGTGAGGAGGGCTGTTGGATTTGCTCCTACAGCCGATCTATTCATTAAGGCTTCTAAGGTTGCAGCCGCTTCACGAGAGCTTGTGACATTTGATGACAGCTCTGTAGTTGTGGTAACAGAACATGATCTTGAAGGATACAACCCAAGCTGTCAATCAGGAACCATGCCAAGTGAAATATGGGCAGATTTAAGTGTTGTTTACCGTGTACGTGTTGCTGGACAGGCAGCATTGGCAAGAATATCGTGCCTTTGGCTGCGATACGGTTCTAACCAGAAGATTTCTGCGGAGAACCTGAGCGGGGAAAGCAGTTGCTCAGTCAGAACTAATCACTTGGGAGCAATTAGTGTTGATATCCATGTCTACTGA 981 0.4628 MHIEELKVGEVGEGGEEGRSSFVGSDAKRVLVGAGARVLFYPTLFYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNEPYETLVPTALYHAHGIDHLVIPTRDYCFAPSLHDLCCAVDFIHGNALSGRTTYVHCKAGRGRSTTVVICYLVHYKQMTPDAAYEYLKSIRPRVLLASAQWQAVQEYYYHLMVRRAVGFAPTADLFIKASKVAAASRELVTFDDSSVVVVTEHDLEGYNPSCQSGTMPSEIWADLSVVYRVRVAGQAALARISCLWLRYGSNQKISAENLSGESSCSVRTNHLGAISVDIHVY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2589 326 Gene3D Protein tyrosine phosphatase superfamily 59 210 IPR029021 -
Lja4g2589 326 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 204 IPR029021 -
Lja4g2589 326 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Lja4g2589 326 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Lja4g2589 326 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Lja4g2589 326 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 326 - -
Lja4g2589 326 Pfam Dual specificity phosphatase, catalytic domain 84 201 IPR000340 GO:0008138|GO:0016311
Lja4g2589 326 PANTHER - 1 326 - -
Lja4g2589 326 CDD PTPMT1 59 201 IPR044596 GO:0004721
Lja4g2589 326 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2589 Lja-Chr4 33360381 33364402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2589 19 326 Protein tyrosine phosphatase (PTP) family AT2G35680 59.810 2.46e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2589 - - gmx:100790413 550.821