Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2585 ATGATGGTTGCAAAGGAAGATTTGGGTTTGAGTCTGAGCCTCAACTTCCCTCAGAAAACTCCAAATCCTCATCCTCTGAATCTCATGTCATCTTCCACTTACTCATCTTCTCCCTCTGGTTGCAATCCTCAAAAACCCTCTTGGAATGAACACTTCACTTCCTCAGATCGAAACTCTGAAACATGCAGAGGCGAAGCGGGACCGTTCCTGTTCGGAATCGACGTGAACCGGTTACCATCCGCCGTTGATTGTGAGGAGGAAGCAGGGGTTTCATCTCCCAACAGCACCGTCTCCACCGTGAGCGGAAAACGAAGCGAGAGAGAGACCAACGGCGAAGAAGAGCACGATGGAGACGAAGAAGACGCTGAAACCGCCAGAAAAAAACTCAGGCTCTCCAAAGACCAATCAGCTATTCTTGAAGAGAGCTTCAAAGAACACAATACCCTCAACCCTAAGCAAAAGTTGGCACTGGCAAAACGGTTAGGCCTTCGACCTAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACTGAGGTTGACTGCGAGGTGTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCTCAATTCTACATGCAAATGACCCCACCAACGACCCTCACCATGTGCCCTTCTTGTGAGCGCGTGGCCGTGCCGTCCTCTGCCGTTGAGGCTGCAACGCGCCACCATCCCATGGCCCAAGCCCATCATCGGCCCATGCCTGTTGGCCCATGGGCTTCTGCAGCGTCTATCACTCACCGCCCTTTTGATGTTTTCCGTCACTGA 858 0.514 MMVAKEDLGLSLSLNFPQKTPNPHPLNLMSSSTYSSSPSGCNPQKPSWNEHFTSSDRNSETCRGEAGPFLFGIDVNRLPSAVDCEEEAGVSSPNSTVSTVSGKRSERETNGEEEHDGDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVEAATRHHPMAQAHHRPMPVGPWASAASITHRPFDVFRH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2585 285 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 277 - -
Lja4g2585 285 Coils Coil 181 218 - -
Lja4g2585 285 MobiDBLite consensus disorder prediction 84 127 - -
Lja4g2585 285 CDD homeodomain 126 183 IPR001356 GO:0003677
Lja4g2585 285 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Lja4g2585 285 MobiDBLite consensus disorder prediction 89 104 - -
Lja4g2585 285 SMART HOX_1 124 186 IPR001356 GO:0003677
Lja4g2585 285 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Lja4g2585 285 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Lja4g2585 285 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Lja4g2585 285 MobiDBLite consensus disorder prediction 15 61 - -
Lja4g2585 285 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Lja4g2585 285 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Lja4g2585 285 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Lja4g2585 285 PANTHER - 4 277 - -
Lja4g2585 285 Gene3D - 130 180 - -
Lja4g2585 285 SUPERFAMILY Homeodomain-like 121 183 IPR009057 -
Lja4g2585 285 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2585 Lja-Chr4 33330791 33332846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2585 1 284 Homeobox Transcription Factor Family AT4G16780 64.360 4.73e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g2585 HD-ZIP_N 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2585 K09338 - gmx:100813367 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0127 2 1080962 1082957 Lja4g2585 4 33330791 33332846 PCT