Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2582 ATGACCCGGCGATGCTCGCATTGCAGCCATGGTGGCCACAACGCCAGGACCTGCCCCAACCGCGGAGTCAAGCTTTTCGGTGTCCGATTGACTGATGGCTCGATCCGGAAGAGTGCTAGTATGGGTAATCTCACCCACTACACTGGCTCCGGGTCTGGACCTCTTCTTGGTGGGTCCAATAACCCTGATTCTCCCGGTGAAACCCCTGATCACGCCGCCGCTGCTGACGGTTACGCCTCTGAGGATTTTGTTCCTGGCTCTTCTTCTAGCTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACACAGAATGTTTTTACTTGGATTGCAGAAACTGGGCAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATTTCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGAGAAAGAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGATGCGTCCGACACTCCAATGGTAGAGCAAGACTTCTTGTCAGCTAATCAGCTACAGACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCCATTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAATAGATGGAGACTCTGCCCTGTTAAAGCCCGACACTCCAATACCGCCAACCTACCCGGTGTTATATCCTGCATATTATCCTCCATTCTACCCGTATCCTCTGCCTTATTGGTCTGGATACAGTCCTGCAGAGCCCCCAAAGAAAGAGGAGACACATGAAGTGGTGAAGCCAACTGCGGTGCTTTCCAAAAGCCCAATCAATGTGGATGAACTTGTCGGCATGTCAAAACTGAGTTTGGGAGACTCCATTGGTGACTCTGGCCCCTCCTCTCTGTCTCGAAAACTCGTCGAAGAAGGACCTTCCAGACAATCAGCTTTTCATGCTACTCCAGCATGTGGCAGTTCAAATATAAATGGCAGTGTCATACATGCAGTTTAA 1011 0.4946 MTRRCSHCSHGGHNARTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYTGSGSGPLLGGSNNPDSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDASDTPMVEQDFLSANQLQTETEGNNPLPAPPPIDEECESMDSTNSIDGDSALLKPDTPIPPTYPVLYPAYYPPFYPYPLPYWSGYSPAEPPKKEETHEVVKPTAVLSKSPINVDELVGMSKLSLGDSIGDSGPSSLSRKLVEEGPSRQSAFHATPACGSSNINGSVIHAV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2582 336 MobiDBLite consensus disorder prediction 40 66 - -
Lja4g2582 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Lja4g2582 336 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Lja4g2582 336 ProSiteProfiles SANT domain profile. 95 148 IPR017884 -
Lja4g2582 336 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g2582 336 PANTHER BNAC01G21010D PROTEIN 1 327 - -
Lja4g2582 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Lja4g2582 336 MobiDBLite consensus disorder prediction 40 101 - -
Lja4g2582 336 CDD SANT 99 144 IPR001005 -
Lja4g2582 336 SMART sant 96 146 IPR001005 -
Lja4g2582 336 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Lja4g2582 336 PANTHER TRANSCRIPTION FACTOR KUA1 1 327 - -
Lja4g2582 336 MobiDBLite consensus disorder prediction 186 221 - -
Lja4g2582 336 Gene3D - 98 150 - -
Lja4g2582 336 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2582 Lja-Chr4 33145670 33150213 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja4g2582 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2582 - - cam:101491712 553.132