Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2580 ATGGACAAGGAAGAATCTGTCCTTCCAGACAGTGAACTTCAACCAGCAACTACCTCCTTGTCTCTCACCATTATTGCCACCACTTCCTCTTCTTCCTCCTCCGCAGAAGAAGTCACAAACATGGTGAAGAAGAACAAGAATGAGAAGAAGGGTGTGAAGAGAAGCAACGATGGGAAGCACCCAACTTACAGAGGAGTGCGCATGCGTCAATGGGGCAAATGGGTGTCAGAAATCAGAGAGCCGAGAAAGAAGTCCAGAATTTGGCTCGGCACTTTTCCCACGCCGGACATGGCAGCTCGAGCACATGACGTGGCGGCTCTCACCATTAAAGGCAGCGGAGCTTACCTCAATTTCCCTGAATTGGCGGCCGAGCTGCCGCGCCCGGCCTCTACTTCCCCGAAGGACATCCAAGTGGCGGCCGCCAAGGCAGCCGCCACAGATTTCACCTGGCACCGGAGCAGCGAAGCCGAAGCCGAGACCACTTCCTCTTCCTCTTCCTCCTCGAGTCACAATCACAAGCAAGGATCATCATTGTTGAAGGGTGAGGATGAGATGTTTTTGGACCTTCCTGATCTCTCACTTGATCACTTGAATCATAATGCTGATGAGGGGTTTTATTATTACTCCTCTGCTTGGCTTGTAGACTCTGGTTTTCACCTTGAAGTTGAAGAGCCATTTCCATGGGAGGAATCATATTAA 699 0.5093 MDKEESVLPDSELQPATTSLSLTIIATTSSSSSSAEEVTNMVKKNKNEKKGVKRSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPDMAARAHDVAALTIKGSGAYLNFPELAAELPRPASTSPKDIQVAAAKAAATDFTWHRSSEAEAETTSSSSSSSSHNHKQGSSLLKGEDEMFLDLPDLSLDHLNHNADEGFYYYSSAWLVDSGFHLEVEEPFPWEESY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2580 232 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Lja4g2580 232 MobiDBLite consensus disorder prediction 155 175 - -
Lja4g2580 232 MobiDBLite consensus disorder prediction 150 177 - -
Lja4g2580 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 26 226 - -
Lja4g2580 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 226 - -
Lja4g2580 232 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Lja4g2580 232 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Lja4g2580 232 MobiDBLite consensus disorder prediction 41 64 - -
Lja4g2580 232 MobiDBLite consensus disorder prediction 28 65 - -
Lja4g2580 232 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Lja4g2580 232 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Lja4g2580 232 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Lja4g2580 232 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lja4g2580 232 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2580 Lja-Chr4 33107793 33108644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2580 53 226 AP2-EREBP Transcription Factor Family AT2G44940 49.296 1.29e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g2580 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2580 - - lja:Lj4g3v1221570.1 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0124 2 1034331 1035339 Lja4g2580 4 33107793 33108644 PCT