Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2578 ATGGCACCCAAAAATGCCAGTGGACCAGCTAAGAAAGCAATGAACAGAGGAGTCTGGACCCAAGAGGAAGATCAAAAGCTAGCCCAATGCATTGAAGCTCATGGTGCAAAGAAGTGGAAAACTATTGCAGTGAAATCAGGTCTAAATAGGTGTGGGAAGAGTTGCAGATTGAGATGGTTGAACTACCTGAGACCCAATATCAAGAGAGGGAACATATCAGATGAAGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTGGGAAACAGGTGGTCTTTAATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAACTCAATCAAGAAGCAGAAAAACCAGAAACTTCCACGGCGCAAGAAACCATCGTCCAGAACCAGTTTACTGAGGACAGTGCCATGTTACAGAACAAGGATGTGGTTAATGGAAGTGGTAGCTCAGATGATAGCTTTGACCTGGACGAATTCTTTAACTTTTCATCTGGAGAAACCTTCGAGTTTGACTGGATTAATAAGTACTTAGAACTTGATCAGGTTTCTGAAAGCACACAAAGGATCTGA 594 0.4209 MAPKNASGPAKKAMNRGVWTQEEDQKLAQCIEAHGAKKWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKLNQEAEKPETSTAQETIVQNQFTEDSAMLQNKDVVNGSGSSDDSFDLDEFFNFSSGETFEFDWINKYLELDQVSESTQRI* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2578 197 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lja4g2578 197 CDD SANT 73 114 IPR001005 -
Lja4g2578 197 Gene3D - 9 69 - -
Lja4g2578 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 196 - -
Lja4g2578 197 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 196 - -
Lja4g2578 197 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lja4g2578 197 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lja4g2578 197 Gene3D - 72 142 - -
Lja4g2578 197 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lja4g2578 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lja4g2578 197 SMART sant 68 116 IPR001005 -
Lja4g2578 197 SMART sant 15 65 IPR001005 -
Lja4g2578 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lja4g2578 197 CDD SANT 19 63 IPR001005 -
Lja4g2578 197 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2578 Lja-Chr4 33035711 33037436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2578 10 127 MYB Transcription Factor Family AT3G13540 63.559 2.70e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2578 Myb_DNA-binding 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2578 K09422 - gmx:100799575 291.967