Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2574 ATGGGTGCCTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGAGGTTCCTGCAGAGGGTCAGGTGCTGGGAGTATCGTCAGCAGCCTTCGATTGTCCGTTTGACCAGGCCTACTCGCCCTGACAAGGCTCGCCGCTTGGGCTACAAGGCTAAGCAGGGTTATGTGGTTTACCGTGTTCGTGTTCGAAGGGGTGGGAGGAAGAGGCCAGTTCCCAAAGGTATTGTTTATGGGAAGCCAACAAACCAAGGAGTTACTCAACTGAAATTTCAGCGCAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAATTGGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGATTCGACCTACAAATATTATGAGATCATTTTGGTGGATGTTGCCCACACTGCTATAAGGAATGACCCAAGGATCAATTGGCTGTGCAATCCAGTCCATAAGCACAGAGAACTGACCGGAAAGACTTCTGCTGGGAAACATAACAGGGGTTTGGTGGGCAAAGGACATCGCCACCACAAAGCACGTCCATCCCGCAGGGCAACATGGAAGAAAAACAACTCTCTTTCTCTTCGTCGCTACCGCTGA 615 0.5106 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIILVDVAHTAIRNDPRINWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKKNNSLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2574 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lja4g2574 204 MobiDBLite consensus disorder prediction 163 204 - -
Lja4g2574 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Lja4g2574 204 MobiDBLite consensus disorder prediction 173 190 - -
Lja4g2574 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Lja4g2574 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lja4g2574 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lja4g2574 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lja4g2574 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2574 Lja-Chr4 32954985 32957124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2574 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 92.157 1.70e-126 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2574 K02877 - zju:107415665 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0122 2 1006633 1008176 Lja4g2574 4 32954985 32957124 PCT