Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2560 ATGGAAAAGCACAAATGCAAGCTTTGCTCAAGGTCCTTTGCTAATGGCAGAGCCCTTGGTGGACACATGAAGGCTCACCTTGCTGCTCTGCCTCTTCCACCAAAACCAGAACAAAAACAATCCTTCACTTCACTGTCATTTTCTTCTTCTGCATCAGAATCACAACAAGAAGAAGATGATGATGAAGTACTGGCACTCAGAGAATCAGAGGAAAAGGCTATGATTTATGGTTTGAGGGAGAATCCCAAGAAAAGTTGCAGAGTTGCAGATCCTAAATTCTCTTTTGCACCAGATACTGGTTTTCTGGTCCAAGACAGAGAGAGCGAGACTGAGTCAAAGAACCCAACTCGCCAACGATCCAAGCGGAACCGCCGCAACCAGAACCAGAATTCTGAAGAACCCAGAAAGGTGAAGATGAGTTTCACGGTGCCAGCTTCACCTGAACCACCGTTGAGCTCTGTTTCCGACACTTCCCCTGAAGAAGATGTTGCTCGGTGTCTCATGATGCTGTCTAGGGACAATTGGACGAGGAACAACAACAACAATCACAGTGTTGGATGCAGCAGCAGCAAAGAGAAGATCAAGTTCAAGCGTGTTCGAGGGAAGCACGGTTGTGAGAATTGTGGGAAAGCGTTTCGATCTTCACGAGCATTGGGTAGTCACAGAAGTGTGTGCTGCGTTGATGCCAAAGGTGAAGGAAATGGTAGTGATGAAAAGATTTTTGAATGCCCATTTTGTTATAAGGTTTTTGGGTCTGGTCAAGCACTTGGTGGACACAAGAGATCTCATCTCATTGCATCTTCATCATCAAATGCTAACAATGTTGGTTGTGGTAGATTGAAGCAGAGCCTCATAGATCTTAACTTGCCAGCTCCACCTGAAGAAGATGATCTCAGTGTTGTTTCTGATGCCTAA 915 0.4536 MEKHKCKLCSRSFANGRALGGHMKAHLAALPLPPKPEQKQSFTSLSFSSSASESQQEEDDDEVLALRESEEKAMIYGLRENPKKSCRVADPKFSFAPDTGFLVQDRESETESKNPTRQRSKRNRRNQNQNSEEPRKVKMSFTVPASPEPPLSSVSDTSPEEDVARCLMMLSRDNWTRNNNNNHSVGCSSSKEKIKFKRVRGKHGCENCGKAFRSSRALGSHRSVCCVDAKGEGNGSDEKIFECPFCYKVFGSGQALGGHKRSHLIASSSSNANNVGCGRLKQSLIDLNLPAPPEEDDLSVVSDA* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2560 304 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lja4g2560 304 Pfam C2H2-type zinc finger 4 28 - -
Lja4g2560 304 Pfam C2H2-type zinc finger 203 222 - -
Lja4g2560 304 Pfam C2H2-type zinc finger 241 264 - -
Lja4g2560 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lja4g2560 304 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Lja4g2560 304 MobiDBLite consensus disorder prediction 100 159 - -
Lja4g2560 304 Gene3D Classic Zinc Finger 200 263 - -
Lja4g2560 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 224 IPR013087 -
Lja4g2560 304 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Lja4g2560 304 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 304 IPR044303 GO:0006355
Lja4g2560 304 MobiDBLite consensus disorder prediction 28 68 - -
Lja4g2560 304 MobiDBLite consensus disorder prediction 37 53 - -
Lja4g2560 304 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 304 - -
Lja4g2560 304 SUPERFAMILY beta-beta-alpha zinc fingers 203 263 IPR036236 -
Lja4g2560 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 263 IPR013087 -
Lja4g2560 304 SMART c2h2final6 241 263 IPR013087 -
Lja4g2560 304 SMART c2h2final6 203 223 IPR013087 -
Lja4g2560 304 SMART c2h2final6 4 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2560 Lja-Chr4 32708112 32709127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2560 1 301 C2H2 Transcription Factor Family AT3G60580 37.309 1.08e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g2560 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2560 - - gmx:100815124 316.62