Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2558 ATGGGTAAGGTTCACGGATCTCTTGCTCGTGCTGGGAAGGTGAGAGGCCAAACTCCCAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCCCGCGGCCGCGCTCACAAGCGCATGCAATACAACCGCCGATTCGTCACCGCCGTTGTGGGATTCGGAAAGAAGCGTGGACCTAACTCATCTGAGAAGTGA 189 0.5661 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK* 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2558 62 MobiDBLite consensus disorder prediction 1 40 - -
Lja4g2558 62 MobiDBLite consensus disorder prediction 22 40 - -
Lja4g2558 62 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 62 - -
Lja4g2558 62 Pfam Ribosomal protein S30 3 59 IPR006846 GO:0003735|GO:0005840|GO:0006412
Lja4g2558 62 PANTHER 40S RIBOSOMAL PROTEIN S30 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2558 Lja-Chr4 32683584 32684430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2558 1 62 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 1.14e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2558 K02983 - egt:105965546 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0108 2 826587 827389 Lja4g2558 4 32683584 32684430 PCT