Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2549 ATGGCTTCTCTGTTCCCCAAAACCCTAACTCCAATCCATTTCCTTCACCGAACTCGACCTCGAATTCGAACTCAAACTCATCCTTCCAAGCTAACCTCCATTCGAGCCATGAGCTCCGGCTCCGGCCAGCGCGTCTTCCAGCTCAGGCTTGACCCGCTAACCGGCAACTCCGAATGGGTCATCATCGACGAACACGACGACCAAAGCTTCACCGAGAAGTTCCGGCAACCCCTTCTCGCCACGACGTCGTATCTGGACATGCTCAACGATTCCACCCGAAACAGAGCATATCGTGAAGCCATTGAAAAAACCATCACCAAACCTTGCCATGTTCTCGATATCGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTTCACGAGCTATGGGTGGCAAAGGGACTGTGACGGCGTGTGAGTCTTATCTTCCGATGGTGAAGCTGATGAAGAAGGTGCTGCGCGTTAATGGCATGGAAGGAAGAATCAAAGTCATCAATAAGCGCTCTGATGAACTCGAAGTTGGGCTTGATATCAATTCACGTGCGGATGTTCTTGTAAGCGAGATACTAGATTCGGAACTATTGGGTGAGGGGCTCATACCGACCCTGCAGCATGCACATGACAATTTGTTGGTAGAAAATCCTCTGACCGTGCCGTATCGAGCAACTACATATGGACAGCTGGTGGAGAGTACATTCTTATGGCAGTTGCATGATTTGCCTAACAATGAAGCTGGTGCACGTGATGGCATTCGTCTTAACCCTCCAGGACTTGATAGTGTTTTAGGTGTCAAACGTCAGCAATATGCCATGTATTGTGATCCCATAGAAGGAGAAATAAAACCACTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTCGAAACGGCCAGAAAGTTATGGAGAAACTGACCTGTGCATAAAGGCAACTAATGATGGTAGAGTTCATGCCGTCATATCTTGGTGGGTACTTCAACTTGATCGTGAAGGGACAATCTATTATTCTACTGCTCCTAGGTGGATAAGCTCACCAACAAATAAAACAGGTCCTGTTGATTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCAGGCTGTGGTATTTCCATATTCAAAGGGGAAGAAATTCAATTACTTGCTACTCATGATGATACTAAAATCTCATACAATTTAGATTCCAAAGTGCCAACAACTGATGTTTTGCATCATGGATTGACTACTGGAGATATGCAGCTTGTACTGTCACCAGAAAGAGCTGCAATCTATGGAGACAGAGAATGGAGGCTTTCAATGTTGAAAACAGTAGAAAGTGTGTTGCAGGGAAGAGGTGACTCATTATGCCTGGTTGCAGATGATAGTGTGTTTTTACCACTTCTTGTGGCACAGCTTTCAGAAGCACCACATATAATATCGTTACTTCCGGGGTTGAAGGAAAGAGGCCTCCAATATTTGCAAGCTGCTGCCAATGCAAATCATTTGCCTCCTAATTGCATAGAAATTCTTGGGAAAAGGGTGAAACAGTTAACCACGCAGGATACACACCAGAAAAAGGTTGATCTGTTAATAGCTGAACCTTTCTATTTGGGACATGATGGCATGCTTCCATGGCAGAACCTACGGTTTTGGGAGGATCGTACTACACTTGATTATATCCTCTCTGAAGATGCTCTGATAATGCCTAGTAAAGGAATATTGAGGGCTTGTGCTATCTATCTTCCTGATCTTTGGAAGAGCCGATGTTGCTTGAGTAAGATAGAAGGTTTTGACCATTCAGTTGTGAATGACACATTAGGGGCTTGCGGTCATCTACCTGAAATGGAAGAGGGTCCTTGTCTTCCTTTCTTTGTTTGGCAGTGTGGTGAATTTGAAGTGCTTAGTGAGACATTTGATGTAATGGAGTTTGATTTTTCAAAGCCTATCTGTCATTGCCAAGGAAAATCCCAGGTTCAATTCACCAAGACTGGGGTATGTCATGGGTTTGTCCTATGGATTGACTGGGTGATGGATTTGCAGAACTCTGTTGTGATATCAACTGGTCCAGATAAGAGATATTGGAAGCAGGGAGTAAAGCTTCTGGCATCGCCTAGAACAGTAGGACCCCAAGAATCGAGAAATGTCCAAGCAAGTTGTTCTGCAGTTCTTGAAGCACTTTTTGATCCATTAAAGGGGGAGCTCAAAATTACAACCGATTTCAGATGA 2202 0.445 MASLFPKTLTPIHFLHRTRPRIRTQTHPSKLTSIRAMSSGSGQRVFQLRLDPLTGNSEWVIIDEHDDQSFTEKFRQPLLATTSYLDMLNDSTRNRAYREAIEKTITKPCHVLDIGAGTGLLSMMASRAMGGKGTVTACESYLPMVKLMKKVLRVNGMEGRIKVINKRSDELEVGLDINSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENPLTVPYRATTYGQLVESTFLWQLHDLPNNEAGARDGIRLNPPGLDSVLGVKRQQYAMYCDPIEGEIKPLSEPFKIFEFDFSKRPESYGETDLCIKATNDGRVHAVISWWVLQLDREGTIYYSTAPRWISSPTNKTGPVDWCDHWKQCVWFVPGCGISIFKGEEIQLLATHDDTKISYNLDSKVPTTDVLHHGLTTGDMQLVLSPERAAIYGDREWRLSMLKTVESVLQGRGDSLCLVADDSVFLPLLVAQLSEAPHIISLLPGLKERGLQYLQAAANANHLPPNCIEILGKRVKQLTTQDTHQKKVDLLIAEPFYLGHDGMLPWQNLRFWEDRTTLDYILSEDALIMPSKGILRACAIYLPDLWKSRCCLSKIEGFDHSVVNDTLGACGHLPEMEEGPCLPFFVWQCGEFEVLSETFDVMEFDFSKPICHCQGKSQVQFTKTGVCHGFVLWIDWVMDLQNSVVISTGPDKRYWKQGVKLLASPRTVGPQESRNVQASCSAVLEALFDPLKGELKITTDFR* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2549 733 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 384 IPR029063 -
Lja4g2549 733 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 66 389 IPR025799 GO:0016274|GO:0018216
Lja4g2549 733 Pfam Ribosomal protein L11 methyltransferase (PrmA) 99 191 - -
Lja4g2549 733 Gene3D - 565 733 - -
Lja4g2549 733 Gene3D Vaccinia Virus protein VP39 77 219 IPR029063 -
Lja4g2549 733 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 399 718 IPR025799 GO:0016274|GO:0018216
Lja4g2549 733 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 46 673 IPR025799 GO:0016274|GO:0018216
Lja4g2549 733 PIRSF Arg_N-mtase 43 733 IPR014644 GO:0006479|GO:0008168
Lja4g2549 733 Gene3D - 220 404 - -
Lja4g2549 733 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 482 710 IPR029063 -
Lja4g2549 733 Gene3D Vaccinia Virus protein VP39 411 561 IPR029063 -
Lja4g2549 733 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 46 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2549 Lja-Chr4 32610237 32615453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2549 86 224 C2H2 Transcription Factor Family AT3G12270 32.432 4.85e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2549 K11438 - gmx:100785846 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2549 4 32610237 32615453 Lja4g2549 4 32610237 32615453 ECH