Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2522 ATGGATTTGAAGTCTTCTCATGCTTCTCCCTTACTTACTGATCCTGTTCCTATCAACAAGTCACGGCTTGGAATCCATCCTAATCAGCTAGCTTACTCTCATCAAGATTCATCAATGTCTTCCGGGAAGTTCACAAAATCCAGCTCAAAGAAAAGTATAGGGAGTCTTGATGATGTCAGGTCCAATGGTTGGCTTGATGCTATGAAGGCTTCTTCCCCTCCTAGGAAGAAGTCACCTAAAGGTTCAAGTACTCAAGTTTCCGCAATTGACAATGACATTGAAGACTATAATTCATGGATGTTGGGTTATCCTTCAGCAATAGATTCTTTTGAGGAAATTGTTGATCGTGCTAAGGATAAGACAATTGCAATGTTTCTTGACTATGATGGCACACTGTCACCAATTGTAGATGATCCAGATTGTGCCTTTATGTCTGAATATATGCGCAAAACTGTAAGAAGAGTAGCAAAGCATTTCCCTACCGCAATCATAAGTGGGAGAAGTCGTGATAAGGTGTTTGATTTAGTTAAACTAACAGAACTCTACTATGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCAAAAAACCATCAAAGTTGTGTCAAGTCTACTGACCTTCAGGGAAAAGAGATAACTCTTTTTCAACCTGCAAGAGAATTCATTCCTATGATTGATGAGGTTTTTAGAACCCTCATTGATCTTACAAAAGACATAGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTACATTATCGTAATGTAGAAGAGAATAATTGGACAACGATTGGTCAGCGGGTCCATGATATGCTAAAAAATTACCCTCGTTTACGCTCAACTCATGGACGGAAGGTTTTAGAAGTTCGTCCAGTGATCGACTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTTTAGGGCTAACTGATAGGAATCATGTGCTTCCCATCTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGGTGCTTAGGGAGAGCAATCAAGGTTATGGGATTTTGGTATCATCTGTGAGGAAAGAAAGCAATGCCTTTTACTCTCTCCGAGACCCCACTGAGGTGATGAAGTTTCTCCAACTCTTGGTCAATTGGAAGAAACAACAAGAAAGGAAGCGTGGAAAAAAATAA 1179 0.3953 MDLKSSHASPLLTDPVPINKSRLGIHPNQLAYSHQDSSMSSGKFTKSSSKKSIGSLDDVRSNGWLDAMKASSPPRKKSPKGSSTQVSAIDNDIEDYNSWMLGYPSAIDSFEEIVDRAKDKTIAMFLDYDGTLSPIVDDPDCAFMSEYMRKTVRRVAKHFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHQSCVKSTDLQGKEITLFQPAREFIPMIDEVFRTLIDLTKDIEGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDMLKNYPRLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLTDRNHVLPIYIGDDKTDEDAFKVLRESNQGYGILVSSVRKESNAFYSLRDPTEVMKFLQLLVNWKKQQERKRGKK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2522 392 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 342 IPR006379 -
Lja4g2522 392 CDD HAD_TPP 123 373 - -
Lja4g2522 392 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 388 IPR044651 GO:0004805|GO:0005992
Lja4g2522 392 SUPERFAMILY HAD-like 123 383 IPR036412 -
Lja4g2522 392 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Lja4g2522 392 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 388 - -
Lja4g2522 392 Gene3D - 220 392 IPR023214 -
Lja4g2522 392 Gene3D - 122 210 IPR023214 -
Lja4g2522 392 TIGRFAM T6PP: trehalose-phosphatase 121 379 IPR003337 GO:0003824|GO:0005992
Lja4g2522 392 MobiDBLite consensus disorder prediction 26 56 - -
Lja4g2522 392 MobiDBLite consensus disorder prediction 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2522 Lja-Chr4 31349667 31352547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2522 123 378 Trehalose Biosynthesis Gene Families AT1G70290 26.909 1.22e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2522 K01087 - tcc:18606311 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2522 4 31349667 31352547 Lja4g2522 4 31349667 31352547 ECH